CF-MPC Publication
Publications
Filter
Louail, P. ; Brunius, C. ; Garcia-Aloy, M. ; Kumler, W. ; Storz, N. ; Stanstrup, J. ; Treutler, H. ; Vangeenderhuysen, P. ; Witting, M. ; Neumann, S. ; Rainer, J.
xcms in peak form: Now anchoring a complete metabolomics data preprocessing and analysis software ecosystem.Ramundi, V. ; Witting, M.
Structural annotation of acylcarnitines detected in SRM 1950 using collision-induced dissociation and electron-induced dissociation.Duan, H. ; Körtvely, E. ; Mary, J.L. ; Hauck, S.M. ; Geisbrecht, B.V.
The C-terminal domain of Staphylococcus aureus Efb recruits FHR-2 to C3b, synergistically inhibiting the terminal complement pathway.Ummethum, H. ; Murriello, A.C. ; Werner, M. ; Márquez-Gómez, E. ; König, A.-C. ; Kruse, E. ; Lalonde, M. ; Trauner, M. ; Chanou, A. ; Weiß, M. ; Lee, C.S.K. ; Ettinger, A. ; Erhard, F. ; Hauck, S.M. ; Hamperl, S.
The CGG triplet repeat binding protein 1 counteracts R-loop induced transcription-replication stress.Cecil, A. ; Gentschev, I. ; Prehn, C. ; Hauck, S.M. ; Witting, M. ; Petrov, I. ; Ye, M. ; Othman, E.M. ; Szalay, A.A.
Endogenous gut microbiome and implanted intranasal E. coli-Nissle modulate cancer tissues metabolism in 4T1 syngeneic tumor bearing mice.Thaqi, S.K. ; Siani, R. ; Chiba, A. ; Peine, M. ; Baum, C. ; Witting, M. ; Walch, S. ; Leinweber, P. ; Schloter, M. ; Schulz, S.
Strain-specific strategies underlie convergent phosphate solubilization in Bacillus.Oluwagbemigun, K. ; Ziegler, D. ; Strom, A. ; Heier, M. ; Bönhof, G.J. ; Roden, M. ; Rathmann, W. ; Meisinger, C. ; Peters, A. ; Hauck, S.M. ; Petrera, A. ; Sinner, M.F. ; Kääb, S. ; Thorand, B. ; Herder, C.
Association of inflammatory and cardiovascular proteomics biomarkers with indices of heart rate variability in the general population: KORA S4/FF4 study.Distler, U. ; Yoo, H.B. ; Kardell, O. ; Hein, D. ; Sielaff, M. ; Scherer, M. ; Jozefowicz, A.M. ; Leps, C. ; Gomez-Zepeda, D. ; von Toerne, C. ; Merl-Pham, J. ; Barth, T.K. ; Tüshaus, J. ; Giesbertz, P. ; Müller, T. ; Kliewer, G. ; Aljakouch, K. ; Helm, B. ; Unger, H. ; Frey, D.L. ; Helm, D. ; Schwarzmüller, L.E. ; Popp, O. ; Qin, D. ; Wudy, S.I. ; Sinn, L.R. ; Mergner, J. ; Ludwig, C. ; Imhof, A. ; Kuster, B. ; Lichtenthaler, S.F. ; Krijgsveld, J. ; Klingmüller, U. ; Mertins, P. ; Coscia, F. ; Ralser, M. ; Mülleder, M. ; Hauck, S.M. ; Tenzer, S.
Multicenter evaluation of label-free quantification in human plasma on a high dynamic range benchmark set.Varkevisser, R.D.M. ; Petrera, A. ; Hauck, S.M. ; Mul, D. ; Aanstoot, H.J. ; Paterson, A. ; Wolffenbuttel, B.H.R. ; van der Klauw, M.M.
Targeted proteomics analysis in type 1 diabetes identifies lower agouti-related protein levels in individuals with impaired hypoglycaemia awareness.Chakraborty, A. ; Giraldo-Arias, J. ; Merl-Pham, J. ; Dick, E. ; Mastalerz, M. ; Zöller, M. ; Marchi, H. ; Le Gleut, R. ; Hatz, R. ; Behr, J. ; Hilgendorff, A. ; Hauck, S.M. ; Staab-Weijnitz, C.A.
Cholesterol regulates airway epithelial cell differentiation by inhibiting p53 nuclear translocation.Merl-Pham, J. ; Knüppel, L. ; Binzenhöfer, L. ; Hennen, E. ; Kaminski, N. ; Hatz, R. ; Behr, J. ; Hauck, S.M. ; Hilgendorff, A. ; Eickelberg, O. ; Staab-Weijnitz, C.A.
Collagen post-translational modifications are altered in IPF including within ECM receptor binding motifs.Singh, I. ; Onogi, Y. ; Menezes, F. ; Khasanova, D. ; Kang, L. ; Wang, C. ; Ruiz-Trave, J. ; Sharma, S. ; Khalil, A. ; Reichenbach, V.K. ; Shi, Y. ; Flatley, A. ; Yan, X. ; Israel, A. ; Dragano, N.R.V. ; Aguilar-Pimentel, J.A. ; Hoffmann, A. ; Ghosh, A. ; Noé, F. ; Wolfrum, C. ; Cucuruz, S. ; König, A.-C. ; Burtscher, I. ; Hauck, S.M. ; Lickert, H. ; Hofmann, S.M. ; Feederle, R. ; Schriever, S.C. ; Hernandez-Bautista, R. ; Sancar, G. ; Cebrian Serrano, A. ; Tetko, I. ; Fuchs, H. ; Gailus-Durner, V. ; Blüher, M. ; Hrabě de Angelis, M. ; Ussar, S.
NRAC controls CD36-mediated fatty acid uptake in adipocytes and lipid clearance in vivo.Kardell, O. ; Gronauer, T.F. ; von Toerne, C. ; Merl-Pham, J. ; König, A.-C. ; Barth, T.K. ; Mergner, J. ; Ludwig, C. ; Tüshaus, J. ; Giesbertz, P. ; Breimann, S. ; Schweizer, L. ; Müller, T. ; Kliewer, G. ; Distler, U. ; Aljakouch, K. ; Gomez‐Zepeda, D. ; Popp, O. ; Qin, D. ; Teupser, D. ; Cox, J. ; Imhof, A. ; Küster, B. ; Lichtenthaler, S.F. ; Krijgsveld, J. ; Tenzer, S. ; Mertins, P. ; Coscia, F. ; Hauck, S.M.
Correction to “Multicenter longitudinal quality assessment of MS-based proteomics in plasma and serum”.Martinez, S. ; Gradillas, A. ; Cermakova, H. ; Witting, M. ; Barbas, C.
Determining carbon-carbon double bond position of unsaturated glycerophospholipids in human plasma NIST® SRM® 1950 by electron impact excitation of ions from organics-tandem mass spectrometry (EIEIO-MS/MS).Klavaris, A. ; König, A.-C. ; Demetriades, C. ; Hauck, S.M. ; Kirmizis, A.
Affinity purification-mass spectrometry to identify nuclear protein interactions of N-terminal acetyltransferase NAA40.Yıldırım, S. ; Mhamane, A. ; Lösch, S. ; Wieder, A. ; Ermis, E. ; König, A.-C. ; Yilmaz, S. ; Hauck, S.M. ; Kocabaş, F. ; Szendroedi, J. ; Herzig, S. ; Ekim Üstünel, B.
TSC22D1 is a newly identified inhibitor of insulin secretion in pancreatic beta cells.Burankova, Y. ; Abele, M. ; Bakhtiari, M. ; von Toerne, C. ; Barth, T.K. ; Schweizer, L. ; Giesbertz, P. ; Schmidt, J.R. ; Kalkhof, S. ; Müller-Deile, J. ; van Veelen, P.A. ; Mohammed, Y. ; Hammer, E. ; Arend, L. ; Adamowicz, K. ; Laske, T. ; Hartebrodt, A. ; Frisch, T. ; Meng, C. ; Matschinske, J. ; Späth, J. ; Röttger, R. ; Schwämmle, V. ; Hauck, S.M. ; Lichtenthaler, S.F. ; Imhof, A. ; Mann, M. ; Ludwig, C. ; Kuster, B. ; Baumbach, J. ; Zolotareva, O.
Privacy-preserving multicenter differential protein abundance analysis with FedProt.Artati, A. ; Couacault, P. ; Witting, M.
Nontargeted metabolomics using the Sciex ZenoTOF 7600.Dreher, S.I. ; Goj, T. ; von Toerne, C. ; Hoene, M. ; Irmler, M. ; Ouni, M. ; Jähnert, M. ; Beckers, J. ; Hrabě de Angelis, M. ; Peter, A. ; Moller, A. ; Birkenfeld, A.L. ; Schürmann, A. ; Hauck, S.M. ; Weigert, C.
Sex differences in resting skeletal muscle and the acute and long-term response to endurance exercise in individuals with overweight and obesity.Peters, L. ; Drechsler, M. ; Herrera, M.A. ; Liu, J. ; Pees, B. ; Jarstorff, J. ; Czerwinski, A. ; Lubbock, F. ; Angelidou, G. ; Salzer, L. ; Moors, K.A. ; Paczia, N. ; Shi, Y.M. ; Schulenburg, H. ; Kaleta, C. ; Witting, M. ; Liebeke, M. ; Campopiano, D.J. ; Bode, H.B. ; Dierking, K.
Polyketide synthase-derived sphingolipids mediate microbiota protection against a bacterial pathogen in C. elegans.Graeve, M.D. ; Bittremieux, W. ; Naake, T. ; Huber, C. ; Mattanovich, M. ; Hoffmann, N. ; Marchal, P. ; Chrone, V.G. ; Louail, P. ; Hecht, H. ; Witting, M. ; Rainer, J.
SpectriPy: Enhancing cross-language mass spectrometry data analysis with R and python.Hilgendorff, A. ; Kindt-Dunjko, A. ; Häfner, F. ; Förster, K. ; Heydarian, M. ; Hauck, S.M. ; Flemmer, A.W. ; von Toerne, C. ; Sophia, S. ; Toshner, M. ; Sucre, J.M.S.
Interleukin 7 Signaling as an Indicator of Pulmonary Vascular Disease in Preterm Infants Identified by Proteomic Screening and MRI Analysis.Zöller, M. ; Mayr, C.H. ; Mastalerz, M. ; Dick, E. ; Chakraborty, A. ; Nakayma, M. ; Simon, L. ; Merl-Pham, J. ; Behr, J. ; Hilgendorff, A. ; Schmid, O. ; Hauck, S.M. ; Schiller, H. B. ; Staab-Weijnitz, C.A.
Transient and Persistent Airway Proteome Changes Induced by Cigarette Smoke.Zöller, M. ; Mastalerz, M. ; Dick, E. ; Hennen, E. ; Chakraborty, A. ; Merl-Pham, J. ; Marchi, H. ; Le Gleut, R. ; Jeridi, A. ; Prasse, A. ; Jäger, B. ; Santofimia‐Castaño, P. ; Stoleriu, M.-G. ; Hilgendorff, A. ; Yildirim, A.Ö. ; Hauck, S.M. ; Staab-Weijnitz, C.A.
Quantitative Proteomics Identifies Nuclear Protein 1 as a Regulator of Cell Death in Differentiated Primary Human Bronchial Epithelial Cells.Stoleriu, M.-G. ; Ansari, M. ; Strunz, M. ; Schamberger, A.C. ; Heydarian, M. ; Gabriel, C. ; Najak, A. ; Disovic, A. ; Schneider, J. ; Gerckens, M. ; Burgstaller, G. ; Ding, Y. ; Doryab, A. ; Voss, C. ; Ketscher, C. ; Sienel, W. ; Kauke, T. ; Fertmann, J. ; Schneider, C. ; Behr, J. ; Irmler, M. ; Beckers, J. ; Eickelberg, O. ; Schubert, B. ; Hauck, S.M. ; Hatz, R. ; Schmid, O. ; Stöger, T. ; Schiller, H. B. ; Hilgendorff, A.
Development of advanced in-vitro human bronchial epithelial models and lung cell atlas in COPD enabled by thoracic surgery translational research.Maddhesiya, P. ; Lepko, T. ; Steiner‑Mezzardi, A. ; Schneider, J. ; Schwarz, V. ; Merl-Pham, J. ; Berger, F. ; Hauck, S.M. ; Ronfani, L. ; Bianchi, M.E. ; Simon, T. ; Krontira, A. ; Masserdotti, G. ; Götz, M. ; Ninkovic, J.
Hmgb2 improves astrocyte to neuron conversion by increasing the chromatin accessibility of genes associated with neuronal maturation in a proneuronal factor-dependent manner.Arrigo, A. ; Cremona, O. ; Aragona, E. ; Casoni, F. ; Consalez, G. ; Dogru, R.M. ; Hauck, S.M. ; Antropoli, A. ; Bianco, L. ; Parodi, M.B. ; Bandello, F. ; Grosche, A.
Müller cells trophism and pathology as the next therapeutic targets for retinal diseases.Tutino, M. ; Yu, N.Y.-L. ; Hatzikotoulas, K. ; Park, Y.-C. ; Kreitmaier, P. ; Katsoula, G. ; Berner, R. ; Casteels, K. ; Elding Larsson, H. ; Kordonouri, O. ; Ołtarzewski, M. ; Szypowska, A. ; Ott, R. ; Weiss, A. ; Winkler, C. ; Zapardiel-Gonzalo, J. ; Petrera, A. ; Hauck, S.M. ; Bonifacio, E. ; Ziegler, A.-G. ; Zeggini, E.
Genetics of circulating proteins in newborn babies at high risk of type 1 diabetes.Abdel-Aziz, M.I. ; Hashimoto, S. ; Neerincx, A.H. ; Haarman, E.G. ; Cecil, A. ; Lintelmann, J. ; Witting, M. ; Hauck, S.M. ; Kerssemakers, N. ; Verster, J.C. ; Bang, C. ; Franke, A. ; Dierdorp, B.S. ; Dekker, T.J. ; Metwally, N.K.A. ; Duitman, J.W. ; Lutter, R. ; Gorenjak, M. ; Toncheva, A.A. ; Kheiroddin, P. ; Harner, S. ; Brandstetter, S. ; Wolff, C. ; Corcuera-Elosegui, P. ; López-Fernández, L. ; Perez-Garcia, J. ; Almeida, M.M. ; Sardón-Prado, O. ; Pino-Yanes, M. ; Potocnik, U. ; Kabesch, M. ; Vijverberg, S.J.H. ; Kraneveld, A.D. ; Maitland-van der Zee, A.H.
Metabotypes are linked to uncontrolled childhood asthma, gut microbiota, and systemic inflammation.Wagemann, O. ; Nübling, G. ; Martínez-Murcia, F.J. ; Wlasich, E. ; Loosli, S.V. ; Sandkühler, K. ; Stockbauer, A. ; Prix, C. ; Katzdobler, S. ; Petrera, A. ; Hauck, S.M. ; Fortea, J. ; Romero-Zaliz, R. ; Jiménez-Mesa, C. ; Górriz Sáez, J.M. ; Höglinger, G. ; Levin, J.
Exploratory analysis of the proteomic profile in plasma in adults with Down syndrome in the context of Alzheimer's disease.El Abiead, Y. ; Rutz, A. ; Zuffa, S. ; Amer, B. ; Xing, S. ; Brungs, C. ; Schmid, R. ; Correia, M.S.P. ; Caraballo-Rodriguez, A.M. ; Zarrinpar, A. ; Mannochio-Russo, H. ; Witting, M. ; Mohanty, I. ; Pluskal, T. ; Bittremieux, W. ; Knight, R. ; Patterson, A.D. ; van der Hooft, J.J.J. ; Böcker, S. ; Dunn, W.B. ; Linington, R.G. ; Wishart, D.S. ; Wolfender, J.L. ; Fiehn, O. ; Zamboni, N. ; Dorrestein, P.C.
Discovery of metabolites prevails amid in-source fragmentation.Fleischer, A.B. ; Amann, B. ; von Toerne, C. ; Degroote, R.L. ; Schmalen, A. ; Weiser, T. ; Hauck, S.M. ; Deeg, C.A.
Differential expression of ARG1 and MRC2 in retinal Müller glial cells during autoimmune uveitis.Witting, M. ; Salzer, L. ; Meyer, S.W. ; Barsch, A.
Phosphorylated glycosphingolipids are commonly detected in Caenorhabditis elegans lipidomes.Fischer, A. ; Han, W. ; Hu, S. ; Mück-Häusl, M. ; Wannemacher, J. ; Kadri, S. ; Lin, Y. ; Dai, R. ; Christ, S. ; Su, Y. ; Dasgupta, B. ; Sardogan, A. ; Deisenhofer, C. ; Dutta, S. ; Kadri, A. ; Güney, T.G. ; Correa-Gallegos, D. ; Mayr, C.H. ; Hatz, R. ; Stoleriu, M.G. ; Lindner, M. ; Hilgendorff, A. ; Adler, H. ; Machens, H.G. ; Schiller, H.B. ; Hauck, S.M. ; Rinkevich, Y.
Author Correction: Targeting pleuro-alveolar junctions reverses lung fibrosis in mice.Han, S. ; Yu, S. ; Shi, M. ; Harada, M. ; Ge, J. ; Lin, J. ; Prehn, C. ; Petrera, A. ; Li, Y. ; Sam, F. ; Matullo, G. ; Adamski, J. ; Suhre, K. ; Gieger, C. ; Hauck, S.M. ; Herder, C. ; Roden, M. ; Casale, F.P. ; Cai, N. ; Peters, A. ; Wang-Sattler, R.
LEOPARD: Missing view completion for multi-timepoint omics data via representation disentanglement and temporal knowledge transfer.Fischer, A. ; Han, W. ; Hu, S. ; Mück-Häusl, M. ; Wannemacher, J. ; Kadri, S. ; Lin, Y. ; Dai, R. ; Christ, S. ; Su, Y. ; Dasgupta, B. ; Sardogan, A. ; Deisenhofer, C. ; Dutta, S. ; Kadri, A. ; Güney, T.G. ; Correa-Gallegos, D. ; Mayr, C.H. ; Hatz, R. ; Stoleriu, M.G. ; Lindner, M. ; Hilgendorff, A. ; Adler, H. ; Machens, H.G. ; Schiller, H.B. ; Hauck, S.M. ; Rinkevich, Y.
Targeting pleuro-alveolar junctions reverses lung fibrosis in mice.Kardell, O. ; Gronauer, T.F. ; von Toerne, C. ; Merl-Pham, J. ; König, A.-C. ; Barth, T.K. ; Mergner, J. ; Ludwig, C. ; Tüshaus, J. ; Giesbertz, P. ; Breimann, S. ; Schweizer, L. ; Müller, T. ; Kliewer, G. ; Distler, U. ; Gomez-Zepeda, D. ; Popp, O. ; Qin, D. ; Teupser, D. ; Cox, J. ; Imhof, A. ; Küster, B. ; Lichtenthaler, S.F. ; Krijgsveld, J. ; Tenzer, S. ; Mertins, P. ; Coscia, F. ; Hauck, S.M.
Multicenter longitudinal quality assessment of MS-based proteomics in plasma and serum.Witting, M. ; Rainer, J.
Bio- and chemoinformatic approaches for metabolomics data analysis.Miranda-Cervantes, A. ; Fritzen, A.M. ; Raun, S.H. ; Hodek, O. ; Møller, L.L.V. ; Johann, K. ; Deisen, L. ; Gregorevic, P. ; Gudiksen, A. ; Artati, A. ; Adamski, J. ; Andersen, N.R. ; Sigvardsen, C.M. ; Carl, C.S. ; Voldstedlund, C.T. ; Kjøbsted, R. ; Hauck, S.M. ; Schjerling, P. ; Jensen, T.E. ; Cebrian Serrano, A. ; Jähnert, M. ; Gottmann, P. ; Burtscher, I. ; Lickert, H. ; Pilegaard, H. ; Schürmann, A. ; Tschöp, M.H. ; Moritz, T. ; Müller, T.D. ; Sylow, L. ; Kiens, B. ; Richter, E.A. ; Kleinert, M.
Pantothenate kinase 4 controls skeletal muscle substrate metabolism.Riols, F. ; Witting, M. ; Haid, M.
Differential mobility spectrometry-based cardiolipin analysis.