Cell Biology Scheibner, K; Schirge, S; Burtscher, I; Büttner, M; Sterr, M; Yang, D; Böttcher, A; Ansarullah; Irmler, M; Beckers, J.; Cernilogar, FM; Schotta, G; Theis, FJ* and Lickert H* Epithelial cell plasticity drives endoderm formation during gastrulation 2021 Nature Ansarullah; Jain, C; Far,…
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Data Analysis and Benchmarking back to Theis lab kBET A test metric for assessing single-cell RNA-seq batch correction A test metric for assessing single-cell RNA-seq batch correction Büttner et al. (Nature Methods, 2018) kBET is a user-friendly, robust and sensitive k -nearest-neighbor test for the…
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iscanpy.readthedocs.io/en/latest/ Cell to cell heterogeneity What makes a successful pathogen: Understanding the impact of cell-to-cell heterogeneity in chromatin structure on infection and adaptation” and of the Impuls und Vernetzungsfonds of the Helmholtz-Gemeinschaft Incubator grant “sparse2big”…
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single-cell data manifolds, based on connectivity estimations of manifold partitions. PAGA maps preserve the global topology of data, allow researchers to analyze data at different resolutions, and increase the computational efficiency of the typical exploratory data analysis workflow. Learn more…
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Cell Biology Scheibner, K; Schirge, S; Burtscher, I; Büttner, M; Sterr, M; Yang, D; Böttcher, A; Ansarullah; Irmler, M; Beckers, J.; Cernilogar, FM; Schotta, G; Theis, FJ* and Lickert H* Epithelial cell plasticity drives endoderm formation during gastrulation 2021 Nature Ansarullah; Jain, C; Far,…
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Research Institute of Diabetes and Regeneration Research, Helmholtz Center Munich 2005-2012 Postdoc in Endoderm Research Stem Cell Institute, Helmholtz Zentrum Munich 2000-2004 PhD student Queen Mary & Westfield College, University of London 1993-1999 Diploma studies in Biology University of Vienna…
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(WIRM) 2011 ‘Habilitation’ stipend Science Career II Technical University of Munich 2007 Best Oral Abstract 26th Congress of the European Academy of Allergy and Clinical Immunology (EAACI) 2005 HWP II Postdoctoral stipend Technical University of Munich Publications See all 2023 International Journal…
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Ibarra, I.L., Holmberg, O., Virshup, I., Lotfollahi, M., Richter, S., Theis, F.J. 2022. Squidpy: A Scalable Framework for Spatial Single Cell Analysis . Nature Methods. Lange, M., Bergen, V., Klein, M., Setty, M., Reuter, B., Bakhti, M, Lickert, H. Ansari, M. Schniering, J. Schuller, H.B., Peér D.,…
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s Lange M, Bergen V, Klein M, Setty M, Reuter B, Bakhti M, Lickert H, Ansari M, Schniering J, Schiller HB, Pe'er D, Theis FJ. CellRank for directed single-cell fate mapping Tarquis-Medina M, Scheibner K, González-García I, Bastidas-Ponce A, Sterr M, Jaki J, Schirge S, García-Cáceres C, Lickert H,…
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Nature Metabolism Aliluev, A; Tritschler, S; Sterr, M; Oppenländer, L; Hinterdobler, J; Greisle, T; Irmler, M; Beckers, J; Sun, N; Walch, A; Stemmer, K; Kindt, A; Krumsiek, J; Tschöp, MH; Luecken, M; Theis, F; Lickert, H* and Böttcher, A* Diet-induced alteration of intestinal stem cell identity and…
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