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SysMetStage2_1920x823 Variante
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Patrick Weinisch

PhD candidate
+49 89 3187 49328Email meBuilding/Room: 56/152

Research Interests

  • Establish web-based tools documenting metabolomics analysis pipelines which provide rapid contextualization and a holistic overview of statistical results (
  • Investigation o time-resolved responses to the human metabolism on a systems-level using metabolomics
  • Characterization of metabolic pathway anomalies throughout Alzheimer's Disease progression using cross-sectional and longitudinal metabolomics data

Skills and Expertise

MetabolomicsBioinformaticsMetabolismData IntegrationBiostatisticsBig DataWebtool development

R ShinyTime-resolved metabolic responsesAlzheimer's diseaseDietary responsesPhysiological challenges

Professional Background

2018 - present

PhD in Computational Biology

at the Computational Health Center / ICB, Helmholtz Zentrum München and Exercise Biology a the Technical University Munich


Master's degree in Nutrition and Biomedicine (M.Sc.)

Thesis: “Inferring nutritional status and dietary patterns from single and multi-time point metabolic profiles

Supervisor: Prof. Dr. Hans Hauner, Dr. Gabi Kastenmüller at Technical University Munich

2012 - 2015

Bachelor's degree in Nutrition (B.Sc.)

Thesis: "Development of a high-throughput assay to screen random nucleotide libraries for novel antimicrobial peptides"

Supervisor: Prof. Dr. Dirk Haller, Dr. Thomas Clavel at Technical University Munich

Selected Publications

2023 Frontiers in nutrition

Patrick Weinisch, Jarlei Fiamoncini, Daniela Schranner, Johannes Raffler, Thomas Skurk, Manuela J Rist, Werner Römisch-Margl, Cornelia Prehn, Jerzy Adamski, Hans Hauner, Hannelore Daniel, Karsten Suhre, Gabi Kastenmüller

Dynamic patterns of postprandial metabolic responses to three dietary challenges

Food intake triggers extensive changes in the blood metabolome. The kinetics of these changes depend on meal composition and on intrinsic, health-related characteristics of each individual, making the assessment of changes in the postprandial metabolome an opportunity to assess someone's metabolic status. To enable the usage of dietary challenges as diagnostic tools, profound knowledge about changes that occur in the postprandial period in healthy individuals is needed. In this study, we characterize the time-resolved changes in plasma levels of 634 metabolites in response to an oral glucose tolerance test (OGTT), an oral lipid tolerance test (OLTT), and a mixed meal (SLD) in healthy young males (n = 15). Metabolite levels for samples taken at different time points (20 per individual) during the challenges were available from targeted (132 metabolites) and non-targeted (502 metabolites) metabolomics. Almost half of the profiled metabolites (n = 308) showed a significant change in at least one challenge, thereof 111 metabolites responded exclusively to one particular challenge. Examples include azelate, which is linked to ω-oxidation and increased only in OLTT, and a fibrinogen cleavage peptide that has been linked to a higher risk of cardiovascular events in diabetes patients and increased only in OGTT, making its postprandial dynamics a potential target for risk management. A pool of 89 metabolites changed their plasma levels during all three challenges and represents the core postprandial response to food intake regardless of macronutrient composition. We used fuzzy c-means clustering to group these metabolites into eight clusters based on commonalities of their dynamic response patterns, with each cluster following one of four primary response patterns: (i) "decrease-increase" (valley-like) with fatty acids and acylcarnitines indicating the suppression of lipolysis, (ii) "increase-decrease" (mountain-like) including a cluster of conjugated bile acids and the glucose/insulin cluster, (iii) "steady decrease" with metabolites reflecting a carryover from meals prior to the study, and (iv) "mixed" decreasing after the glucose challenge and increasing otherwise. Despite the small number of subjects, the diversity of the challenges and the wealth of metabolomic data make this study an important step toward the characterization of postprandial responses and the identification of markers of metabolic processes regulated by food intake.