Publications
Kukhtevich, I. ; Persson, S. ; Padovani, F. ; Schneider, R. ; Cvijovic, M. ; Schmoller, K.M.
The origin of septin ring size control in budding yeast.Iturbide Martinez De Albeniz, A. ; Ruiz Tejada Segura, M.L. ; Noll, C. ; Schorpp, K.K. ; Rothenaigner, I. ; Ruiz-Morales, E.R. ; Lubatti, G. ; Agami, A. ; Hadian, K. ; Scialdone, A. ; Torres-Padilla, M.E.
Addendum: Retinoic acid signaling is critical during the totipotency window in early mammalian development.Keogh, M.C. ; Almouzni, G. ; Andrews, A.J. ; Armache, K.J. ; Arrowsmith, C.H. ; Baek, S.H. ; Bedford, M.T. ; Bernstein, E. ; Côté, J.-A. ; David, Y. ; Denu, J.M. ; Fierz, B. ; Garcia, B.A. ; Glass, K.C. ; Gozani, O. ; Helin, K. ; Henikoff, S. ; Jensen, O.N. ; Josefowicz, S.Z. ; Kelleher, N.L. ; Kutateladze, T.G. ; Lindner, H.H. ; Lu, C. ; Luger, K. ; Mallick, P. ; Musselman, C.A. ; Muir, T.W. ; Pasa-Tolic, L. ; Schneider, R. ; Shi, X. ; Shi, Y. ; Sidoli, S. ; Smith, L.M. ; Tyler, J.K. ; Wolberger, C. ; Workman, J.L. ; Strahl, B.D. ; Young, N.L.
A needed nomenclature for nucleosomes.Skerrett-Byrne, D.A. ; Pepin, A.-S. ; Laurent, K. ; Beckers, J. ; Schneider, R. ; Hrabě de Angelis, M. ; Teperino, R.
Dad's diet shapes the future: How paternal nutrition impacts placental development and childhood metabolic health.Zikmund, T. ; Fiorentino, J. ; Penfold, C. ; Stock, M. ; Shpudeiko, P. ; Agarwal, G. ; Langfeld, L. ; Petrova, K. ; Peshkin, L. ; Hamperl, S. ; Scialdone, A. ; Hörmanseder, E.
Differentiation success of reprogrammed cells is heterogeneous in vivo and modulated by somatic cell identity memory.Neupane, J. ; Lubatti, G. ; Gross-Thebing, T. ; Ruiz Tejada Segura, M.L. ; Butler, R.H. ; Gross-Thebing, S. ; Dietmann, S. ; Scialdone, A. ; Surani, M.A.
The emergence of human primordial germ cell-like cells in stem cell-derived gastruloids.Stock, M. ; Losert, C. ; Zambon, M. ; Popp, N. ; Lubatti, G. ; Hörmanseder, E. ; Heinig, M. ; Scialdone, A.
Leveraging prior knowledge to infer gene regulatory networks from single-cell RNA-sequencing data.Throll, P. ; G Dolce, L. ; Rico-Lastres, P. ; Arnold, K. ; Tengo, L. ; Basu, S. ; Kaiser, S. ; Schneider, R. ; Kowalinski, E.
Author Correction: Structural basis of tRNA recognition by the m3C RNA methyltransferase METTL6 in complex with SerRS seryl-tRNA synthetase.Al-Refaie, N. ; Padovani, F. ; Schmoller, K.M. ; Cabianca, D.S.
Localization and expression dynamics of an RNA Pol I core subunit in response to fasting in C. elegans.Chatzitheodoridou, D. ; Bureik, D. ; Padovani, F. ; Nadimpalli, K.V. ; Schmoller, K.M.
Decoupled transcript and protein concentrations ensure histone homeostasis in different nutrients.Tvardovskiy, A. ; Lukauskas, S. ; Bartke, T.
Breaking the epigenetic code with MARCS: The Modification Atlas of Regulation by Chromatin States.Pepin, A.-S. ; Schneider, R.
Publisher Correction: Emerging toolkits for decoding the co-occurrence of modified histones and chromatin proteins.Nitsch, S. ; Schneider, R.
Native ChIP: Studying the genome-wide distribution of histone modifications in cells and tissue.Vitacolonna, M. ; Bruch, R. ; Agaçi, A. ; Nürnberg, E. ; Cesetti, T. ; Keller, F. ; Padovani, F. ; Sauer, S. ; Schmoller, K.M. ; Reischl, M. ; Hafner, M. ; Rudolf, R.
A multiparametric analysis including single-cell and subcellular feature assessment reveals differential behavior of spheroid cultures on distinct ultra-low attachment plate types.Tschuck, J. ; Padmanabhan Nair, V. ; Galhoz, A. ; Zaratiegui, C. ; Tai, H.-M. ; Ciceri, G. ; Rothenaigner, I. ; Tchieu, J. ; Stockwell, B.R. ; Studer, L. ; Cabianca, D.S. ; Menden, M.P. ; Vincendeau, M. ; Hadian, K.
Suppression of ferroptosis by vitamin A or radical-trapping antioxidants is essential for neuronal development.Al-Refaie, N. ; Padovani, F. ; Hornung, J. ; Pudelko, L ; Binando, F. ; Del Carmen Fabregat, A. ; Zhao, Q. ; Towbin, B.D. ; Cenik, E.S. ; Stroustrup, N. ; Padeken, J. ; Schmoller, K.M. ; Cabianca, D.S.
Fasting shapes chromatin architecture through an mTOR/RNA Pol I axis.Roussou, R. ; Metzler, D. ; Padovani, F. ; Thoma, F. ; Schwarz, R. ; Shraiman, B. ; Schmoller, K.M. ; Osman, C.
Real-time assessment of mitochondrial DNA heteroplasmy dynamics at the single-cell level.Pepin, A.-S. ; Schneider, R.
Emerging toolkits for decoding the co-occurrence of modified histones and chromatin proteins.Tvardovskiy, A. ; Lukauskas, S.
Decoding the language of chromatin modifications with MARCS.Throll, P. ; G Dolce, L. ; Rico-Lastres, P. ; Arnold, K. ; Tengo, L. ; Basu, S. ; Kaiser, S. ; Schneider, R. ; Kowalinski, E.
Structural basis of tRNA recognition by the m3C RNA methyltransferase METTL6 in complex with SerRS seryl-tRNA synthetase.Chadha, Y. ; Khurana, A. ; Schmoller, K.M.
Eukaryotic cell size regulation and its implications for cellular function and dysfunction.Thowfeequ, S. ; Fiorentino, J. ; Hu, D. ; Solovey, M. ; Ruane, S. ; Whitehead, M. ; Zhou, F. ; Godwin, J. ; Mateo-Otero, Y. ; Vanhaesebroeck, B. ; Scialdone, A. ; Srinivas, S.
An integrated approach identifies the molecular underpinnings of murine anterior visceral endoderm migration.Stadler, M. ; Lukauskas, S. ; Bartke, T. ; Müller, C.L.
asteRIa enables robust interaction modeling between chromatin modifications and epigenetic readers.Stock, M. ; Popp, N. ; Fiorentino, J. ; Scialdone, A.
Topological benchmarking of algorithms to infer Gene Regulatory Networks from Single-Cell RNA-seq Data.Lukauskas, S. ; Tvardovskiy, A. ; Nguyen, N.V. ; Stadler, M. ; Faull, P. ; Ravnsborg, T. ; Özdemir Aygenli, B. ; Dornauer, S. ; Flynn, H. ; Lindeboom, R.G.H. ; Barth, T.K. ; Brockers, K. ; Hauck, S.M. ; Vermeulen, M. ; Snijders, A.P. ; Müller, C.L. ; DiMaggio, P.A. ; Jensen, O.N. ; Schneider, R. ; Bartke, T.
Publisher Correction: Decoding chromatin states by proteomic profiling of nucleosome readers.Yamaguchi, K. ; Chen, X. ; Rodgers, B. ; Miura, F. ; Bashtrykov, P. ; Bonhomme, F. ; Salinas-Luypaert, C. ; Haxholli, D. ; Gutekunst, N. ; Özdemir Aygenli, B. ; Ferry, L. ; Kirsh, O. ; Laisné, M. ; Scelfo, A. ; Ugur, E. ; Arimondo, P.B. ; Leonhardt, H. ; Kanemaki, M.T. ; Bartke, T. ; Fachinetti, D. ; Jeltsch, A. ; Ito, T. ; Defossez, P.A.
Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells.Lukauskas, S. ; Tvardovskiy, A. ; Nguyen, N.V. ; Stadler, M. ; Faull, P. ; Ravnsborg, T. ; Özdemir Aygenli, B. ; Dornauer, S. ; Flynn, H. ; Lindeboom, R.G.H. ; Barth, T.K. ; Brockers, K. ; Hauck, S.M. ; Vermeulen, M. ; Snijders, A.P. ; Müller, C.L. ; DiMaggio, P.A. ; Jensen, O.N. ; Schneider, R. ; Bartke, T.
Decoding chromatin states by proteomic profiling of nucleosome readers.Pudelko, L ; Cabianca, D.S.
The influencers' era: How the environment shapes chromatin in 3D.Basu, S. ; Shukron, O. ; Hall, D.W. ; Parutto, P. ; Ponjavic, A. ; Shah, D.I. ; Boucher, W. ; Lando, D. ; Zhang, W. ; Reynolds, N. ; Sober, L.H. ; Jartseva, A. ; Ragheb, R. ; Ma, X. ; Cramard, J. ; Floyd, R. ; Balmer, J. ; Drury, T.A. ; Carr, A.R. ; Needham, L.M. ; Aubert, A. ; Communie, G. ; Gor, K. ; Steindel, M. ; Morey, L. ; Blanco, E. ; Bartke, T. ; di Croce, L. ; Berger, I. ; Schaffitzel, C. ; Lee, S.F. ; Stevens, T.J. ; Klenerman, D. ; Hendrich, B.D. ; Holcman, D. ; Laue, E.D.
Publisher Correction: Live-cell three-dimensional single-molecule tracking reveals modulation of enhancer dynamics by NuRD.Mairhörmann, B. ; Padovani, F. ; Schmoller, K.M.
Zugängliche KI-Algorithmen für bessere Zellmikroskopie.Chanou, A. ; Weiß, M. ; Holler, K. ; Sajid, A. ; Straub, T. ; Krietsch, J. ; Sanchi, A. ; Ummethum, H. ; Lee, C.S.K. ; Kruse, E. ; Trauner, M. ; Werner, M. ; Lalonde, M. ; Lopes, M. ; Scialdone, A. ; Hamperl, S.
Single molecule MATAC-seq reveals key determinants of DNA replication origin efficiency.Khurana, A. ; Chadha, Y. ; Schmoller, K.M.
Too big not to fail: Different paths lead to senescence of enlarged cells.Basu, S. ; Shukron, O. ; Hall, D. ; Parutto, P. ; Ponjavic, A. ; Shah, D. ; Boucher, W. ; Lando, D. ; Zhang, W. ; Reynolds, N. ; Sober, L.H. ; Jartseva, A. ; Ragheb, R. ; Ma, X. ; Cramard, J. ; Floyd, R. ; Balmer, J. ; Drury, T.A. ; Carr, A.R. ; Needham, L.M. ; Aubert, A. ; Communie, G. ; Gor, K. ; Steindel, M. ; Morey, L. ; Blanco, E. ; Bartke, T. ; di Croce, L. ; Berger, I. ; Schaffitzel, C. ; Lee, S.F. ; Stevens, T.J. ; Klenerman, D. ; Hendrich, B.D. ; Holcman, D. ; Laue, E.D.
Live-cell three-dimensional single-molecule tracking reveals modulation of enhancer dynamics by NuRD.Seel, A. ; Padovani, F. ; Mayer, M. ; Finster, A. ; Bureik, D. ; Thoma, F. ; Osman, C. ; Klecker, T. ; Schmoller, K.M.
Regulation with cell size ensures mitochondrial DNA homeostasis during cell growth.Auge, G. ; Hankofer, V. ; Groth, M. ; Antoniou-Kourounioti, R. ; Ratikainen, I. ; Lampei, C.
Plant environmental memory: Implications, mechanisms and opportunities for plant scientists and beyond.Gaggioli, V. ; Lo, C.S.Y. ; Reveron-Gomez, N. ; Jasencakova, Z. ; Domenech, H. ; Nguyen, H. ; Sidoli, S. ; Tvardovskiy, A. ; Uruci, S. ; Slotman, J.A. ; Chai, Y. ; Gonçalves, J.G.S.C.S. ; Manolika, E.M. ; Jensen, O.N. ; Wheeler, D. ; Sridharan, S. ; Chakrabarty, S. ; Demmers, J. ; Kanaar, R. ; Groth, A. ; Taneja, N.
Dynamic de novo heterochromatin assembly and disassembly at replication forks ensures fork stability.Beagrie, R.A. ; Thieme, C.J. ; Annunziatella, C. ; Baugher, C. ; Zhang, Y. ; Schueler, M. ; Kukalev, A. ; Kempfer, R. ; Chiariello, A.M. ; Bianco, S. ; Li, Y. ; Davis, T. ; Scialdone, A. ; Welch, L.R. ; Nicodemi, M. ; Pombo, A.
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C.Guthmann, M. ; Qian, C. ; Gialdini, I. ; Nakatani, T. ; Ettinger, A. ; Schauer, T. ; Kukhtevich, I. ; Schneider, R. ; Lamb, D.C. ; Burton, A. ; Torres-Padilla, M.E.
A change in biophysical properties accompanies heterochromatin formation in mouse embryos.Lubatti, G. ; Stock, M. ; Iturbide Martinez De Albeniz, A. ; Ruiz Tejada Segura, M.L. ; Riepl, M. ; Tyser, R.C.V. ; Danese, A. ; Colomé-Tatché, M. ; Theis, F.J. ; Srinivas, S. ; Torres-Padilla, M.E. ; Scialdone, A.
CIARA: A cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data.Nieborak, A. ; Lukauskas, S. ; Capellades, J. ; Heyn, P. ; Santos, G.S. ; Motzler, K. ; Zeigerer, A. ; Bester, R. ; Protzer, U. ; Schelter, F. ; Wagner, M. ; Carell, T. ; Hruscha, A. ; Schmid, B. ; Yanes, O. ; Schneider, R.
Depletion of pyruvate kinase (PK) activity causes glycolytic intermediate imbalances and reveals a PK-TXNIP regulatory axis.Lazzardi, S. ; Valle, F. ; Mazzolini, A. ; Scialdone, A. ; Caselle, M. ; Osella, M.
Emergent statistical laws in single-cell transcriptomic data.Bannister, A.J. ; Schneider, R. ; Varga-Weisz, P.
Editorial: Colyn Crane-Robinson (1935-2023).Karl, L.A. ; Galanti, L. ; Bantele, S.C. ; Metzner, F. ; Šafarić, B. ; Rajappa, L. ; Foster, B. ; Pires, V.B. ; Bansal, P. ; Chacin, E. ; Basquin, J. ; Duderstadt, K.E. ; Kurat, C.F. ; Bartke, T. ; Hopfner, K.P. ; Pfander, B.
A SAM-key domain required for enzymatic activity of the Fun30 nucleosome remodeler.Yahia, Y. ; Pigeot, A. ; El Aabidine, A.Z. ; Shah, N. ; Karasu, N. ; Forne, I. ; Krebs, S. ; Blum, H. ; Esnault, C. ; Sexton, T. ; Imhof, A. ; Eick, D. ; Andrau, J.C.
RNA polymerase II CTD is dispensable for transcription and required for termination in human cells.Sheikh, A.H. ; Nawaz, K. ; Tabassum, N. ; Almeida-Trapp, M. ; Mariappan, K.G. ; Alhoraibi, H. ; Rayapuram, N. ; Aranda, M. ; Groth, M. ; Hirt, H.
Linker histone H1 modulates defense priming and immunity in plants.Weiß, M. ; Chanou, A. ; Schauer, T. ; Tvardovskiy, A. ; Meiser, S. ; König, A.-C. ; Schmidt, T. ; Kruse, E. ; Ummethum, H. ; Trauner, M. ; Werner, M. ; Lalonde, M. ; Hauck, S.M. ; Scialdone, A. ; Hamperl, S.
Single-copy locus proteomics of early- and late-firing DNA replication origins identifies a role of Ask1/DASH complex in replication timing control.Scialdone, A. ; Rivron, N.
In preprints: Improving and interrogating embryo models.Kukhtevich, I. ; Rivero-Romano, M. ; Rakesh, N. ; Bheda, P. ; Chadha, Y. ; Rosales-Becerra, P. ; Hamperl, S. ; Bureik, D. ; Dornauer, S. ; Dargemont, C. ; Kirmizis, A. ; Schmoller, K.M. ; Schneider, R.
Quantitative RNA imaging in single live cells reveals age-dependent asymmetric inheritance.Schuh, L. ; Kukhtevich, I. ; Bheda, P. ; Schulz, M. ; Bordukova, M. ; Schneider, R. ; Marr, C.
Altered expression response upon repeated gene repression in single yeast cells.Freitag, M. ; Jaklin, S. ; Padovani, F. ; Radzichevici, E. ; Zernia, S. ; Schmoller, K.M. ; Stigler, J.
Single-molecule experiments reveal the elbow as an essential folding guide in SMC coiled coil arms.Padovani, F. ; Mairhörmann, B. ; Falter-Braun, P. ; Lengefeld, J. ; Schmoller, K.M.
Segmentation, tracking and cell cycle analysis of live-cell imaging data with Cell-ACDC.Beer, S. ; Wange, L.E. ; Zhang, X. ; Kuklik-Roos, C. ; Enard, W. ; Hammerschmidt, W. ; Scialdone, A. ; Kempkes, B.
EBNA2-EBF1 complexes promote MYC expression and metabolic processes driving S-phase progression of Epstein-Barr virus-infected B cells.Wang, X. ; Rosikiewicz, W. ; Sedkov, Y. ; Mondal, B. ; Martinez, T. ; Kallappagoudar, S. ; Tvardovskiy, A. ; Bajpai, R. ; Xu, B. ; Pruett-Miller, S.M. ; Schneider, R. ; Herz, H.M.
The MLL3/4 complexes and MiDAC co-regulate H4K20ac to control a specific gene expression program.Tvardovskiy, A. ; Nguyen, N. ; Bartke, T.
Identifying specific protein interactors of nucleosomes carrying methylated histones using quantitative mass spectrometry.Schmoller, K.M. ; Lanz, M.C. ; Kim, J. ; Koivomagi, M. ; Qu, Y. ; Tang, C. ; Kukhtevich, I. ; Schneider, R. ; Rudolf, F. ; Moreno, D.F. ; Aldea, M. ; Lucena, R. ; Skotheim, J.M.
Whi5 is diluted and protein synthesis does not dramatically increase in pre-Start G1.Yakimov, A.S. ; Denisov, I.A. ; Bukatin, A.S. ; Lukyanenko, K.A. ; Belousov, K.I. ; Kukhtevich, I. ; Esimbekova, E.N. ; Evstrapov, A.A. ; Belobrov, P.
Droplet microfluidic device for chemoenzymatic sensing.Stolz, P. ; Mantero, A.S. ; Tvardovskiy, A. ; Ugur, E. ; Wange, L.E. ; Mulholland, C.B. ; Cheng, Y. ; Wierer, M. ; Enard, W. ; Schneider, R. ; Bartke, T. ; Leonhardt, H. ; Elsässer, S.J. ; Bultmann, S.
TET1 regulates gene expression and repression of endogenous retroviruses independent of DNA demethylation.Fiorentino, J. ; Scialdone, A.
The role of cell geometry and cell-cell communication in gradient sensing.Ruiz Tejada Segura, M.L. ; Abou Moussa, E. ; Garabello, E. ; Nakahara, T.S. ; Makhlouf, M. ; Mathew, L.S. ; Wang, L. ; Valle, F. ; Huang, S.S.Y. ; Mainland, J.D. ; Caselle, M. ; Osella, M. ; Lorenz, S. ; Reisert, J. ; Logan, D.W. ; Malnic, B. ; Scialdone, A. ; Saraiva, L.R.
A 3D transcriptomics atlas of the mouse nose sheds light on the anatomical logic of smell.Günsel, G.G. ; Conlon, T.M. ; Jeridi, A. ; Kim, R. ; Ertüz, Z. ; Lang, N.J. ; Ansari, M. ; Novikova, M. ; Jiang, D. ; Strunz, M. ; Gaianova, M. ; Hollauer, C. ; Gabriel, C. ; Angelidis, I. ; Doll, S. ; Pestoni, J. ; Edelmann, S.L. ; Kohlhepp, M.S. ; Guillot, A. ; Bassler, K. ; Van Eeckhoutte, H.P. ; Kayalar, Ö. ; Konyalilar, N. ; Kanashova, T. ; Rodius, S. ; Ballester-Lopez, C. ; Genes Robles, C.M. ; Smirnova, N.F. ; Rehberg, M. ; Agarwal, C. ; Krikki, I. ; Piavaux, B. ; Verleden, S.E. ; Vanaudenaerde, B. ; Königshoff, M. ; Dittmar, G. ; Bracke, K.R. ; Schultze, J.L. ; Watz, H. ; Eickelberg, O. ; Stöger, T. ; Burgstaller, G. ; Tacke, F. ; Heissmeyer, V. ; Rinkevich, Y. ; Bayram, H. ; Schiller, H. B. ; Conrad, M. ; Schneider, R. ; Yildirim, A.Ö.
The arginine methyltransferase PRMT7 promotes extravasation of monocytes resulting in tissue injury in COPD.Iturbide Martinez De Albeniz, A. ; Ruiz Tejada Segura, M.L. ; Noll, C. ; Schorpp, K.K. ; Rothenaigner, I. ; Lubatti, G. ; Agami, A. ; Hadian, K. ; Scialdone, A. ; Torres-Padilla, M.E.
Author Correction: Retinoic acid signaling is critical during the totipotency window in early mammalian development.Nakatani, T. ; Lin, J. ; Ji, F. ; Ettinger, A. ; Pontabry, J. ; Tokoro, M. ; Altamirano-Pacheco, L. ; Fiorentino, J. ; Mahammadov, E. ; Hatano, Y. ; Van Rechem, C. ; Chakraborty, D. ; Ruiz-Morales, E.R. ; Scialdone, A. ; Yamagata, K. ; Whetstine, J.R. ; Sadreyev, R.I. ; Torres-Padilla, M.E.
DNA replication fork speed underlies cell fate changes and promotes reprogramming.Millán-Zambrano, G. ; Burton, A. ; Bannister, A.J. ; Schneider, R.
Histone post-translational modifications - cause and consequence of genome function.Bheda, P.
Aging-associated changes in metabolic regulation of epigenetic modifications and gene expression.Swaffer, M.P. ; Kim, J. ; Chandler-Brown, D. ; Langhinrichs, M. ; Marinov, G.K. ; Greenleaf, W.J. ; Kundaje, A. ; Schmoller, K.M. ; Skotheim, J.M.
Transcriptional and chromatin-based partitioning mechanisms uncouple protein scaling from cell size.Claude, K.-L. ; Bureik, D. ; Chatzitheodoridou, D. ; Adarska, P. ; Singh, A. ; Schmoller, K.M.
Transcription coordinates histone amounts and genome content.Skalska, L. ; Begley, V. ; Beltran, M. ; Lukauskas, S. ; Khandelwal, G. ; Faull, P. ; Bhamra, A. ; Tavares, M. ; Wellman, R. ; Tvardovskiy, A. ; Foster, B. ; Ruiz de Los Mozos, I. ; Herrero, J. ; Surinova, S. ; Snijders, A.P. ; Bartke, T. ; Jenner, R.G.
Nascent RNA antagonizes the interaction of a set of regulatory proteins with chromatin.De Pastina, A. ; Padovani, F. ; Brunetti, G. ; Rotella, C. ; Niosi, F. ; Usov, V. ; Hegner, M.
Multimodal real-time frequency tracking of cantilever arrays in liquid environment for biodetection: Comprehensive setup and performance analysis.Nitsch, S. ; Zorro Shahidian, L. ; Schneider, R.
Histone acylations and chromatin dynamics: Concepts, challenges, and links to metabolism.Iturbide Martinez De Albeniz, A. ; Ruiz Tejada Segura, M.L. ; Noll, C. ; Schorpp, K.K. ; Rothenaigner, I. ; Ruiz-Morales, E.R. ; Lubatti, G. ; Agami, A. ; Hadian, K. ; Scialdone, A. ; Torres-Padilla, M.E.
Retinoic acid signaling is critical during the totipotency window in early mammalian development.Santos-Rosa, H. ; Millán-Zambrano, G. ; Han, N. ; Leonardi, T. ; Klimontova, M. ; Nasiscionyte, S. ; Pandolfini, L. ; Tzelepis, K. ; Bartke, T. ; Kouzarides, T.
Methylation of histone H3 at lysine 37 by Set1 and Set2 prevents spurious DNA replication.Schmoller, K.M.
Coordination of mitochondrial homeostasis with cell size.Belousov, K.I. ; Filatov, N.A. ; Kukhtevich, I. ; Kantsler, V. ; Evstrapov, A.A. ; Bukatin, A.S.
An asymmetric flow-focusing droplet generator promotes rapid mixing of reagents.Brunetti, G. ; Padovani, F. ; De Pastina, A. ; Rotella, C. ; Monahan, A. ; Hoffman, S.L. ; Jongo, S.A. ; Abdulla, S. ; Corradin, G. ; Pluschke, G. ; Daubenberger, C. ; Hegner, M.
Nanotechnological immunoassay for rapid label-free analysis of candidate malaria vaccines.Zorro Shahidian, L. ; Haas, M. ; Le Gras, S. ; Nitsch, S. ; Mourao, A. ; Geerlof, A. ; Margueron, R. ; Michaelis, J. ; Daujat, S. ; Schneider, R.
Succinylation of H3K122 destabilizes nucleosomes and enhances transcription.Petryk, N. ; Bultmann, S. ; Bartke, T. ; Defossez, P.-A.
Staying true to yourself: Mechanisms of DNA methylation maintenance in mammalsBheda, P. ; Aguilar-Gómez, D. ; Kukhtevich, I. ; Becker, J. ; Charvin, G. ; Kirmizis, A. ; Schneider, R.
Microfluidics for single-cell lineage tracking over time to characterize transmission of phenotypes in Saccharomyces cerevisiae.Fiorentino, J. ; Torres-Padilla, M.E. ; Scialdone, A.
Measuring and modeling single-cell heterogeneity and fate decision in mouse embryos.Ignatova, V.V. ; Kaiser, S. ; Ho, J.S.Y. ; Bing, X. ; Stolz, P. ; Tan, Y.X. ; Lee, C.L. ; Gay, F.P.H. ; Lastres, P.R. ; Gerlini, R. ; Rathkolb, B. ; Aguilar-Pimentel, J.A. ; Sanz-Moreno, A. ; Klein-Rodewald, T. ; Calzada-Wack, J. ; Ibragimov, E. ; Valenta, M. ; Lukauskas, S. ; Pavesi, A. ; Marschall, S. ; Leuchtenberger, S. ; Fuchs, H. ; Gailus-Durner, V. ; Hrabě de Angelis, M. ; Bultmann, S. ; Rando, O.J. ; Guccione, E. ; Kellner, S.M. ; Schneider, R.
METTL6 is a tRNA m3C methyltransferase that regulates pluripotency and tumor cell growth.Bheda, P. ; Kirmizis, A. ; Schneider, R.
The past determines the future: Sugar source history and transcriptional memory.Strunz, M. ; Simon, L. ; Ansari, M. ; Kathiriya, J.J. ; Angelidis, I. ; Mayr, C. ; Tsidiridis, G. ; Lange, M. ; Mattner, L. ; Yee, M. ; Ogar, P. ; Sengupta, A. ; Kukhtevich, I. ; Schneider, R. ; Zhao, Z. ; Voss, C. ; Stöger, T. ; Neumann, J.H.L. ; Hilgendorff, A. ; Behr, J. ; O'Reilly, M. ; Lehmann, M. ; Burgstaller, G. ; Königshoff, M. ; Chapman, H.A. ; Theis, F.J. ; Schiller, H. B.
Alveolar regeneration through a Krt8+transitional stem cell state that persists in human lung fibrosis.Huang, S.S.Y. ; Makhlouf, M. ; AbouMoussa, E.H. ; Ruiz Tejada Segura, M.L. ; Mathew, L.S. ; Wang, K. ; Leung, M.C. ; Chaussabel, D. ; Logan, D.W. ; Scialdone, A. ; Garand, M. ; Saraiva, L.R.
Differential regulation of the immune system in a brain-liver-fats organ network during short-term fasting.Kukhtevich, I. ; Lohrberg, N. ; Padovani, F. ; Schneider, R. ; Schmoller, K.M.
Cell size sets the diameter of the budding yeast contractile ring.Bheda, P. ; Aguilar-Gomez, D. ; Becker, N.B. ; Becker, J. ; Stavrou, E. ; Kukhtevich, I. ; Höfer, T. ; Maerkl, S. ; Charvin, G. ; Marr, C. ; Kirmizis, A. ; Schneider, R.
Single-cell tracing dissects regulation of maintenance and inheritance of transcriptional reinduction memory.Bartke, T. ; Schneider, R.
You are what you eat-How nutrition and metabolism shape the genome through epigenetics.Strunz, M. ; Simon, L. ; Ansari, M. ; Mattner, L. ; Angelidis, I. ; Mayr, C. ; Kathiriya, J. ; Yee, M. ; Ogar, P. ; Voss, C. ; Stöger, T. ; Kukhtevich, I. ; Schneider, R. ; Lehmann, M. ; Koenigshoff, M. ; Burgstaller, G. ; O'Reilly, M. ; Chapman, H. ; Theis, F.J. ; Schiller, H. B.
Fate trajectory modeling reveals convergence of airway derived progenitors and AT2 cells on transient KRT8+alveolar cell state during lung regeneration.Ignatova, V.V. ; Stolz, P. ; Kaiser, S. ; Gustafsson, T.H. ; Lastres, P.R. ; Sanz-Moreno, A. ; Cho, Y.-L. ; Amarie, O.V. ; Aguilar-Pimentel, J.A. ; Klein-Rodewald, T. ; Calzada-Wack, J. ; Becker, L. ; Marschall, S. ; Kraiger, M. ; Garrett, L. ; Seisenberger, C. ; Hölter, S.M. ; Borland, K. ; Van De Logt, E. ; Jansen, P.W.T.C. ; Baltissen, M.P. ; Valenta, M. ; Vermeulen, M. ; Wurst, W. ; Gailus-Durner, V. ; Fuchs, H. ; Hrabě de Angelis, M. ; Rando, O.J. ; Kellner, S.M. ; Bultmann, S. ; Schneider, R.
The rRNA m6A methyltransferase METTL5 is involved in pluripotency and developmental programs.Decker, T.-M. ; Forné, I. ; Straub, T. ; Elsaman, H. ; Ma, G. ; Shah, N. ; Imhof, A. ; Eick, D.
Analog-sensitive cell line identifies cellular substrates of CDK9.Beltran, M. ; Tavares, M. ; Justin, N. ; Khandelwal, G. ; Ambrose, J. ; Foster, B. ; Worlock, K.B. ; Tvardovskiy, A. ; Kunzelmann, S. ; Herrero, J. ; Bartke, T. ; Gamblin, S.J. ; Wilson, J.R. ; Jenner, R.G.
Author Correction: G-tract RNA removes Polycomb repressive complex 2 from genes (Nature Structural & Molecular Biology, (2019), 26, 10, (899-909), 10.1038/s41594-019-0293-z).Beltran, M. ; Tavares, M. ; Justin, N. ; Khandelwal, G. ; Ambrose, J. ; Foster, B. ; Worlock, K.B. ; Kunzelmann, S. ; Herrero, J. ; Bartke, T. ; Gamblin, S.J. ; Wilson, J.R. ; Jenner, R.G.
G-tract RNA removes Polycomb repressive complex 2 from genes.Mrozek-Gorska, P. ; Buschle, A. ; Pich, D. ; Schwarzmayr, T. ; Fechtner, R. ; Scialdone, A. ; Hammerschmidt, W.
Epstein-Barr virus reprograms human B lymphocytes immediately in the prelatent phase of infection.Shah, N. ; Decker, T.-M. ; Eick, D.
Extension of the minimal functional unit of the RNA polymerase II CTD from yeast to mammalian cells.Pellegrino, J. ; Shahjahanpour, A. ; Lukauskas, S. ; Olayo Alarcon, R. ; Ramakrishnan, A. ; Colomé-Tatché, M. ; Schneider, R.
Glucose starvation in Huh7 cells triggers a transcriptional memory.Ignatova, V.V. ; Jansen, P.W.T.C. ; Baltissen, M.P. ; Vermeulen, M. ; Schneider, R.
The interactome of a family of potential methyltransferases in HeLa cells.Bartke, T. ; Groth, A.
A chromatin-based signalling mechanism directs the switch from mutagenic to error-free repair of DNA double strand breaks.Nakamura, K. ; Saredi, G. ; Becker, J.R. ; Foster, B. ; Nguyen, N.V. ; Beyer, T.E. ; Cesa, L.C. ; Faull, P.A. ; Lukauskas, S. ; Frimurer, T. ; Chapman, J.R. ; Bartke, T. ; Groth, A.
H4K20meO recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.Campagne, A. ; Lee, M.K. ; Zielinski, D. ; Michaud, A. ; Le Corre, S. ; Dingli, F. ; Chen, H. ; Shahidian, L.Z. ; Vassilev, I. ; Servant, N. ; Loew, D. ; Pasmant, E. ; Postel-Vinay, S. ; Wassef, M. ; Margueron, R.
BAP1 complex promotes transcription by opposing PRC1-mediated H2A ubiquitylation.Nemec, C.M. ; Singh, A.K. ; Ali, A. ; Tseng, S.C. ; Syal, K. ; Ringelberg, K.J. ; Ho, Y.H. ; Hintermair, C. ; Ahmad, M.F. ; Kar, R.K. ; Gasch, A.P. ; Akhtar, M.S. ; Eick, D. ; Ansari, A.Z.
Noncanonical CTD kinases regulate RNA polymerase II in a gene-class-specific manner.Rohrmoser, M. ; Kluge, M. ; Yahia, Y. ; Gruber-Eber, A. ; Maqbool, M.A. ; Forné, I. ; Krebs, S. ; Blum, H. ; Greifenberg, A.K. ; Geyer, M. ; Descostes, N. ; Imhof, A. ; Andrau, J.C. ; Friedel, C.C. ; Eick, D.
MIR sequences recruit zinc finger protein ZNF768 to expressed genes.Sharma, P. ; Lioutas, A. ; Fernandez-Fuentes, N. ; Quilez, J. ; Carbonell-Caballero, J. ; Wright, R.H.G. ; Di Vona, C. ; Le Dily, F. ; Schüller, R. ; Eick, D. ; Oliva, B. ; Beato, M.
Arginine citrullination at the C-terminal domain controls RNA polymerase II transcription.Foster, B. ; Stolz, P. ; Mulholland, C.B. ; Montoya, A. ; Kramer, H. ; Bultmann, S. ; Bartke, T.
Critical role of the UBL domain in stimulating the E3 ubiquitin ligase activity of UHRF1 toward chromatin.Andrau, J.-C. ; Geyer, M. ; Hermeking, H. ; Hölzel, M. ; Imhof, A. ; Murphy, S. ; Schneider, R.
Regulation of transcription: RNA Pol II and Myc.Zorzan, E. ; Da Ros, S. ; Giantin, M. ; Zorro Shahidian, L. ; Guerra, G. ; Palumbo, M. ; Sissi, C. ; Dacasto, M.
Targeting canine KIT promoter by candidate DNA G-quadruplex ligands.Makowski, M.M. ; Grawe, C. ; Foster, B. ; Nguyen, N.V. ; Bartke, T. ; Vermeulen, M.
Global profiling of protein-DNA and protein-nucleosome binding affinities using quantitative mass spectrometry.Nieborak, A. ; Schneider, R.
Metabolic intermediates - Cellular messengers talking to chromatin modifiers.Weidle, U.H. ; Dickopf, S. ; Hintermair, C. ; Kollmorgen, G. ; Birzele, F. ; Brinkmann, U.
The role of micro RNAs in breast cancer metastasis: Preclinical Validation and potential therapeutic targets.Shah, N. ; Maqbool, M.A. ; Yahia, Y. ; El Aabidine, A.Z. ; Esnault, C. ; Forné, I. ; Decker, T.-M. ; Martin, D. ; Schüller, R. ; Krebs, S. ; Blum, H. ; Imhof, A. ; Eick, D. ; Andrau, J.C.
Tyrosine-1 of RNA polymerase II CTD controls global termination of gene transcription in mammals.Kebede, A.F. ; Nieborak, A. ; Shahidian, L.Z. ; Le Gras, S. ; Richter, F.M. ; Gomez, D.A. ; Baltissen, M.P. ; Meszaros, G. ; Magliarelli, H.F. ; Taudt, A. ; Margueron, R. ; Colomé-Tatché, M. ; Ricci, R. ; Daujat, S. ; Vermeulen, M. ; Mittler, G. ; Schneider, R.
Histone propionylation is a mark of active chromatin.Gressel, S. ; Schwalb, B. ; Decker, T.-M. ; Qin, W. ; Leonhardt, H. ; Eick, D. ; Cramer, P.
CDK9-dependent RNA polymerase II pausing controls transcription initiation.Izzo, A. ; Ziegler-Birling, C. ; Hill, P.W.S. ; Brondani, L. ; Hajkova, P. ; Torres-Padilla, M.E. ; Schneider, R.
Dynamic changes in H1 subtype composition during epigenetic reprogramming.Scahill, C.M. ; Digby, Z. ; Sealy, I.M. ; Wojciechowska, S. ; White, R.J. ; Collins, J.E. ; Stemple, D.L. ; Bartke, T. ; Mathers, M.E. ; Patton, E.E. ; Busch-Nentwich, E.M.
Loss of the chromatin modifier Kdm2aa causes BrafV-600E -independent spontaneous melanoma in zebrafish.Col, E. ; Hoghoughi, N. ; Dufour, S. ; Penin, J. ; Koskas, S. ; Faure, V. ; Ouzounova, M. ; Hernandez-Vargash, H. ; Reynoird, N. ; Daujat, S. ; Folco, E.J. ; Vigneron, M. ; Schneider, R. ; Verdel, A. ; Khochbin, S. ; Herceg, Z. ; Caron, C. ; Vourc'h, C.
Bromodomain factors of BET family are new essential actors of pericentric heterochromatin transcriptional activation in response to heat shock.Altamura, S. ; Vegi, N. ; Hueltner, L. ; Schneider, M. ; Höppe, P. ; Schroeder, T. ; Canli, Ö. ; Greten, F.R. ; Aichler, M. ; Walch, A.K. ; Neff, F. ; Janik, D. ; Kuklik-Roos, C. ; Ladinig, C. ; Mysliwietz, J. ; Rathkolb, B. ; Buske, C. ; Conrad, M. ; Muckenthaler, M.U. ; Bornkamm, G.W.
Lack of the ferroptosis inhibitor GPX4 in erythroid cells causes a block in reticulocyte maturation and a hypoxic signature with impaired hepcidin regulation.Nemec, C.M. ; Yang, F. ; Gilmore, J.M. ; Hintermair, C. ; Ho, Y.H. ; Tseng, S.C. ; Heidemann, M. ; Zhang, Y. ; Florens, L. ; Gasch, A.P. ; Eick, D. ; Washburn, M.P. ; Varani, G. ; Ansari, A.Z.
Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner.Chendeb, M. ; Schneider, R. ; Davidson, I. ; Fadloun, A.
Selective elimination of long INterspersed element-1 expressing tumour cells by targeted expression of the HSV-TK suicide gene.Decker, T.-M. ; Kluge, M. ; Krebs, S. ; Shah, N. ; Blum, H. ; Friedel, C.C. ; Eick, D.
Transcriptome analysis of dominant-negative Brd4 mutants identifies Brd4-specific target genes of small molecule inhibitor JQ1.Burger, K. ; Eick, D.
A nonradioactive assay to measure production and processing of ribosomal RNA by 4sU-tagging.Pradeepa, M.M. ; Grimes, G.R. ; Kumar, Y. ; Olley, G. ; Taylor, G.C.A. ; Schneider, R. ; Bickmore, W.A.
Histone H3 globular domain acetylation identifies a new class of enhancers.Schüller, R. ; Eick, D.
Getting access to low-complexity domain modifications.Hintermair, C. ; Voß, K. ; Forne, I. ; Heidemann, M. ; Flatley, A. ; Kremmer, E. ; Imhof, A. ; Eick, D.
Specific threonine-4 phosphorylation and function of RNA polymerase II CTD during M phase progression.Boldt, K. ; van Reeuwijk, J. ; Lu, Q. ; Koutroumpas, K. ; Nguyen, T.M. ; Texier, Y. ; van Beersum, S.E. ; Horn, N. ; Willer, J.R. ; Mans, D.A. ; Dougherty, G. ; Lamers, I.J. ; Coene, K.L. ; Arts, H.H. ; Betts, M.J. ; Beyer, T. ; Bolat, E. ; Gloeckner, C.J. ; Haidari, K. ; Hetterschijt, L. ; Iaconis, D. ; Jenkins, D. ; Klose, F. ; Knapp, B. ; Latour, B. ; Letteboer, S.J. ; Marcelis, C.L. ; Mitic, D. ; Morleo, M. ; Oud, M.M. ; Riemersma, M. ; Rix, S. ; Terhal, P.A. ; Toedt, G. ; van Dam, T.J. ; de Vrieze, E. ; Wissinger, Y. ; Wu, K.M. ; Apic, G. ; Beales, P.L. ; Blacque, O.E. ; Gibson, T.J. ; Huynen, M.A. ; Katsanis, N. ; Kremer, H. ; Omran, H. ; van Wijk, E. ; Wolfrum, U. ; Kepes, F. ; Davis, E.E. ; Franco, B. ; Giles, R.H. ; Ueffing, M. ; Russell, R.B. ; Roepman, R.
An organelle-specific protein landscape identifies novel diseases and molecular mechanisms.Vosberg, S. ; Herold, T. ; Hartmann, L. ; Neumann, M. ; Opatz, S. ; Metzeler, K.H. ; Schneider, S. ; Graf, A. ; Krebs, S. ; Blum, H. ; Baldus, C.D. ; Hiddemann, W. ; Spiekermann, K. ; Bohlander, S.K. ; Mansmann, U. ; Greif, P.A.
Close correlation of copy number aberrations detected by next-generation sequencing with results from routine cytogenetics in acute myeloid leukemia.Bheda, P. ; Jing, H. ; Wolberger, C. ; Lin, H.
The substrate specificity of sirtuins.Lawrence, M. ; Daujat, S. ; Schneider, R.
Lateral thinking: How histone modifications regulate gene expression.Izzo, A. ; Schneider, R.
The role of linker histone H1 modifications in the regulation of gene expression and chromatin dynamics.Kabra, D.G. ; Pfuhlmann, K. ; García-Cáceres, C. ; Schriever, S.C. ; Casquero García, V. ; Kebede, A.F. ; Fuente-Martin, E. ; Trivedi, C. ; Heppner, K. ; Uhlenhaut, N.H. ; Legutko, B. ; Kabra, U.D. ; Gao, Y. ; Yi, C.-X. ; Quarta, C. ; Clemmensen, C. ; Finan, B. ; Müller, T.D. ; Meyer, C.W. ; Paez-Pereda, M. ; Stemmer, K. ; Woods, S.C. ; Perez-Tilve, D. ; Schneider, R. ; Olson, E.N. ; Tschöp, M.H. ; Pfluger, P.T.
Hypothalamic leptin action is mediated by histone deacetylase 5.Quarta, C. ; Schneider, R. ; Tschöp, M.H.
Epigenetic ON/OFF switches for obesity.Schüller, R. ; Forne, I. ; Straub, T. ; Schreieck, A. ; Texier, Y. ; Shah, N. ; Decker, T.-M. ; Cramer, P. ; Imhof, A. ; Eick, D.
Heptad-specific phosphorylation of RNA polymerase II CTD.