Daphne Cabianca

Group Leader, Institute of Functional Epigenetics, Molecular Targets & Therapeutics Center

Dr. Daphne Selvaggia Cabianca

"We investigate how environmental signals shape genome function through chromatin regulation across the life cycle, using the nematode C. elegans to uncover fundamental principles of epigenetic regulation”

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Academic Career

Daphne Cabianca studied Biological Sciences at the University of Pavia, Italy. During her doctoral studies in the group of Davide Gabellini at the San Raffaele Scientific Institute in Milan, she investigated the molecular mechanism at the basis of FSHD muscular dystrophy. Her work (Cell, 2012) increased our understanding of how repetitive DNA and long non-coding RNAs regulate chromatin modifications and transcription, with implications for human disease.

For her postdoctoral training, Daphne moved to Basel (Switzerland) and joined the group of Susan Gasser at the Friedrich Miescher Institute for Biomedical Research (FMI). There, she learned to use C. elegans as a model to study 3D genome organization and epigenetic processes in a whole organism. In her main postdoctoral study (Nature, 2019), she characterized a novel mechanism by which the active chromatin compartment regulates the spatial localization and repression of the silenced compartment of the genome.

In 2020, Daphne started her own group at the Institute of Functional Epigenetics at Helmholtz Munich, and in 2025 she was awarded tenure.

Research in her group focuses on understanding how environmental stimuli—particularly dietary and metabolic cues—shape chromatin organization and function across multiple scales, from chromatin modifications to higher-order genome architecture. Using dietary and genetic manipulations combined with live confocal microscopy, her group recently discovered the first large-scale 3D genome reconfiguration induced by fasting (Nature Cell Biology, 2024).

Her mission is to uncover the mechanisms by which environmental signals drive cellular dysfunction and disease through epigenetic processes, providing fundamental insights to guide the development of novel preventive and therapeutic strategies for environment-related diseases, including metabolic disorders.
 

Fields of Work and Expertise

Molecular Biology Cell biology

 Genetics

Epigenetics

 Live imgaging

 C.elegans

 Genome architecture

Metabolism

Environment 

Professional Background

2026

Group leader, Institute of Functional Epigenetics, Helmholtz Munich (Germany)

2020 - 2025

Junior Group leader, Institute of Functional Epigenetics, Helmholtz Munich (Germany)

2013 - 2020

Postdoc, laboratory of Susan Gasser, FMI (Switzerland)

2012 - 2013

Postdoc, laboratory of Davide Gabellini, San Raffaele Scientific Institute (Italy)

2007 - 2011

PhD in Molecular and Cellular Biology, San Raffaele Scientific Insitute (Italy)

Honors and Awards

  • 2014 - Marie Curie Intra European Postdoctoral Fellowship (FP7)
  • 2014 - EMBO Long Term Postdoctoral Fellowship 
  • 2014 - HFSP Long-Term Postdoctoral Fellowship (kindly declined)
  • 2012 - Nicolò Copernico Award for excellence in biomedical sciences from the Università degli Studi di Ferrara, Italy.
  • 2010 - FacioScapuloHumeral Society Pre-doctoral Fellowship
  • 2006 - Best Biology Student Award, University of Trieste, Italy

Recent Publications

MicroPubl. Biol. 2025, DOI: 10.17912/micropub.biology.001472 (2025)

Al-Refaie, N. ; Padovani, F. ; Schmoller, K.M. ; Cabianca, D.S.

Localization and expression dynamics of an RNA Pol I core subunit in response to fasting in C. elegans.

Tschuck, J. ; Padmanabhan Nair, V. ; Galhoz, A. ; Zaratiegui, C. ; Tai, H.-M. ; Ciceri, G. ; Rothenaigner, I. ; Tchieu, J. ; Stockwell, B.R. ; Studer, L. ; Cabianca, D.S. ; Menden, M.P. ; Vincendeau, M. ; Hadian, K.

Suppression of ferroptosis by vitamin A or radical-trapping antioxidants is essential for neuronal development.
Nat. Cell Biol., DOI: 10.1038/s41556-024-01512-w (2024)

Al-Refaie, N. ; Padovani, F. ; Hornung, J. ; Pudelko, L ; Binando, F. ; Del Carmen Fabregat, A. ; Zhao, Q. ; Towbin, B.D. ; Cenik, E.S. ; Stroustrup, N. ; Padeken, J. ; Schmoller, K.M. ; Cabianca, D.S.

Fasting shapes chromatin architecture through an mTOR/RNA Pol I axis.

Networks and Affiliations

Research Affiliation logo of Daphne Cabiana - Genome 3 SPP2202

Priority Program in Spatial Genome Architecture in Development & Disease

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Logo of Deutsches Forschungsgemeinschaft

German Research Foundation

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Logo of SFB1064 Chromatin Dynamics

CRC Chromatin Dynamics

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Epigenetics at Helmholtz Munich LOGO created by COMS

Epigenetics @ Helmholtz

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Beads on a string
chromatin visualized using 3D-printed nucleosomes (by Igor Kukhtevich) and crochet yarn

The Cabianca Lab belongs to Epigenetics@HelmholtzMunich

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