Deputy of the Research Unit Comparative Microbiome Analysis and Head of the Working Group “Environmental Microbiomes”

Dr. Stefanie Schulz

"Microbiomes in the environment are key drivers for Ecosystem Services, which promote our health. Therefore, we want to develop strategies to protect microbiomes and maintain their functional diversity in the face of climate- and global change."

Academic Pathway

Stefanie Schulz holds a diploma in Biology and a PhD in Natural Sciences.

She started her scientific carrier 2011 as PostDoc at the Technical University Munich at the Chair of Soil Ecology. Since 2012 she is working at Helmholtz Munich. Starting as a PostDoc, she became the Head of the Working Group “Soil Microbiomes” at the Research Unit Comparative Microbiome Analysis in 2015 (now: Environmental Microbiomes). Currently Stefanie is doing her habilitation at the TU München and works as lecturer since 2020. Now, she heads the working group “Environmental Microbiomes” and is the deputy of the Research Unit Comparative Microbiome Analysis.

Microbial communities in the environment are key drivers for Ecosystem Services provided by nature and thereby support human health and wellbeing. However climate- and global change has impacted environmental microbiomes in the last decades, resulting in significant losses of diversity and the associated functions as well as the invasion of new species, which might act as pathogens for humans, animals and plants. Therefore environmental- and human health are closely interconnected as summarized also the in the Planetary Health Concept. We want to develop strategies to stabilize microbial diversity in nature and define strategies for the sustainable use of resources in the face of climate and global change and thereby prevent the development of environmental diseases including allergies and infections.

To tackle the different research topics Stefanie’s group combines high end molecular techniques like next generation sequencing with targeted isolation approaches, stable isotope probing and basic characterization methods like quantitative PCR approaches, potential activity measurements and quantification of nutrient pools.

Dr. Stefanie Schulz about Microbiotic Research

Professional Background

2022

Deputy of COMI

2015

Head of Working Group “Soil Microbiomes” at COMI

2015

Member of DFG-Young researcher academy “Agricultural ecosystem research: Soil resources and plant production”

2008

Member of the Association for General and Applied Microbiology (VAAM) …scientific exchange and cooperation among microbiologists and improvement of communication to the public

Publications

Sci. Rep. 15:30768 (2025)

Bassu, S. ; Eichelsbacher, S. ; Giunta, F. ; Motzo, R. ; Dawid, C. ; Gastl, M. ; Schloter, M. ; Scherf, K.A. ; Hör, S. ; Pinheiro Alves de Souza, Y. ; Schulz, S. ; Stark, T.D. ; Mohler, V. ; Asseng, S.

Positive impact of hydroponics and artificial light on yield and quality of wheat.
ISME Commun. 5:ycaf208 (2025)

Thaqi, S.K. ; Siani, R. ; Chiba, A. ; Peine, M. ; Baum, C. ; Witting, M. ; Walch, S. ; Leinweber, P. ; Schloter, M. ; Schulz, S.

Strain-specific strategies underlie convergent phosphate solubilization in Bacillus.
Water Res. 287:124320 (2025)

Mwanake, R.M. ; Gettel, G.M. ; Wangari, E.G. ; Macharia, G.W. ; Martinez-Cuesta, R. ; Schulz, S. ; Schloter, M. ; Butterbach-Bahl, K. ; Kiese, R.

Elevated in-stream CO2 concentration stimulates net-N2O production from global fluvial ecosystems.
Front. Plant Sci. 16:1681793 (2025)

Paponov, I.A. ; Schulz, S. ; Schloter, M. ; Conesa, A. ; Leshem, Y.

Extracellular vesicles in the rhizosphere: Targets to improve nutrient use efficiency of crops?
Appl. Soil Ecol. 215:106462 (2025)

Fox, A. ; Schulz, S. ; Brennan, F. ; Gschwend, F. ; Barreiro, A. ; Widmer, F. ; Schloter, M. ; Huguenin-Elie, O. ; Lüscher, A.

Long-term mineral fertilization shaped aboveground plant and belowground bacterial and fungal communities more than cutting frequency in a temperate grassland.
Environ. Microbiome 20:92 (2025)

Thaqi, S.K. ; Hensel, N. ; Vitow, N. ; Baum, C. ; Streb, L.-M. ; Kublik, S. ; Leinweber, P. ; Panten, K. ; Schloter, M. ; Schulz, S.

Non-rhizobial endophyte recruitment and diversity in Pisum sativum are strongly shaped by phosphorus fertilizer form.

Madaj, A.M. ; Huang, Y. ; Ebeling, A. ; Ertel, L. ; Gebler, A. ; Gleixner, G. ; Hines, J. ; Roscher, C. ; Weigelt, A. ; Albracht, C. ; Amyntas, A. ; Bassi, L. ; Bonato Asato, A.E. ; Bonkowski, M. ; Bröcher, M. ; Buscot, F. ; De Giorgi, F. ; Pinheiro Alves de Souza, Y. ; Doan, V.C. ; Durka, W. ; Heintz-Buschart, A. ; Hennecke, J. ; Lange, M. ; Medina-van Berkum, P. ; Meyer, S.T. ; Krawczyk, S. ; Rai, A. ; Reitz, T. ; Ristok, C. ; Scheu, S. ; Schloter, M. ; Schulz, S. ; Solbach, M.D. ; Unsicker, S.B. ; Eisenhauer, N.

JenaTron - An experimental approach to study the effects of plant history and soil history on grassland ecosystem functioning.
Agric. Ecosyst. Environ. 385:109565 (2025)

Thaqi, S.K. ; Siani, R. ; Chiba, A. ; Vitow, N. ; Baum, C. ; Leinweber, P. ; Panten, K. ; Schloter, M. ; Schulz, S.

Effects of novel P fertilizers on microbial abundance related to N and P cycling in two on-farm systems.
Front. Env. Sci. 12:1524239 (2025)

Helmreich, B. ; Deeb, M. ; Eben, P. ; Egerer, M. ; Kollmann, J. ; Schulz, S. ; Pauleit, S. ; Weisser, W.W. ; Schloter, M.

Converting infiltration swales to sustainable urban drainage systems can improve water management and biodiversity.

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