Schneider Lab Publications
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Nitsch, S. ; Coraor, A.E. ; Schauer, T. ; Wu, Y. ; Sun, J. ; Möritz, N. ; Funke, J.J. ; Nagpal, H. ; Chua, G.N.L. ; Battistini, F. ; Lauberth, S.M. ; Richard, E.M. ; Orozco, M. ; Liu, S. ; Desviat, L.R. ; Fierz, B. ; Dietz, H. ; Roeder, R.G. ; de Pablo, J.J. ; Schneider, R.
H4K16 acylations destabilize chromatin architecture and facilitate transcriptional response during metabolic perturbations.Kukhtevich, I. ; Persson, S. ; Padovani, F. ; Schneider, R. ; Cvijovic, M. ; Schmoller, K.M.
The origin of septin ring size control in budding yeast.Keogh, M.C. ; Almouzni, G. ; Andrews, A.J. ; Armache, K.J. ; Arrowsmith, C.H. ; Baek, S.H. ; Bedford, M.T. ; Bernstein, E. ; Côté, J.-A. ; David, Y. ; Denu, J.M. ; Fierz, B. ; Garcia, B.A. ; Glass, K.C. ; Gozani, O. ; Helin, K. ; Henikoff, S. ; Jensen, O.N. ; Josefowicz, S.Z. ; Kelleher, N.L. ; Kutateladze, T.G. ; Lindner, H.H. ; Lu, C. ; Luger, K. ; Mallick, P. ; Musselman, C.A. ; Muir, T.W. ; Pasa-Tolic, L. ; Schneider, R. ; Shi, X. ; Shi, Y. ; Sidoli, S. ; Smith, L.M. ; Tyler, J.K. ; Wolberger, C. ; Workman, J.L. ; Strahl, B.D. ; Young, N.L.
A needed nomenclature for nucleosomes.Skerrett-Byrne, D.A. ; Pepin, A.-S. ; Laurent, K. ; Beckers, J. ; Schneider, R. ; Hrabě de Angelis, M. ; Teperino, R.
Dad's diet shapes the future: How paternal nutrition impacts placental development and childhood metabolic health.Throll, P. ; G Dolce, L. ; Rico-Lastres, P. ; Arnold, K. ; Tengo, L. ; Basu, S. ; Kaiser, S. ; Schneider, R. ; Kowalinski, E.
Author Correction: Structural basis of tRNA recognition by the m3C RNA methyltransferase METTL6 in complex with SerRS seryl-tRNA synthetase.Tvardovskiy, A. ; Lukauskas, S. ; Bartke, T.
Breaking the epigenetic code with MARCS: The Modification Atlas of Regulation by Chromatin States.Pepin, A.-S. ; Schneider, R.
Publisher Correction: Emerging toolkits for decoding the co-occurrence of modified histones and chromatin proteins.Nitsch, S. ; Schneider, R.
Native ChIP: Studying the genome-wide distribution of histone modifications in cells and tissue.Pepin, A.-S. ; Schneider, R.
Emerging toolkits for decoding the co-occurrence of modified histones and chromatin proteins.Tvardovskiy, A. ; Lukauskas, S.
Decoding the language of chromatin modifications with MARCS.Throll, P. ; G Dolce, L. ; Rico-Lastres, P. ; Arnold, K. ; Tengo, L. ; Basu, S. ; Kaiser, S. ; Schneider, R. ; Kowalinski, E.
Structural basis of tRNA recognition by the m3C RNA methyltransferase METTL6 in complex with SerRS seryl-tRNA synthetase.Stadler, M. ; Lukauskas, S. ; Bartke, T. ; Müller, C.L.
asteRIa enables robust interaction modeling between chromatin modifications and epigenetic readers.Lukauskas, S. ; Tvardovskiy, A. ; Nguyen, N.V. ; Stadler, M. ; Faull, P. ; Ravnsborg, T. ; Özdemir Aygenli, B. ; Dornauer, S. ; Flynn, H. ; Lindeboom, R.G.H. ; Barth, T.K. ; Brockers, K. ; Hauck, S.M. ; Vermeulen, M. ; Snijders, A.P. ; Müller, C.L. ; DiMaggio, P.A. ; Jensen, O.N. ; Schneider, R. ; Bartke, T.
Publisher Correction: Decoding chromatin states by proteomic profiling of nucleosome readers.Yamaguchi, K. ; Chen, X. ; Rodgers, B. ; Miura, F. ; Bashtrykov, P. ; Bonhomme, F. ; Salinas-Luypaert, C. ; Haxholli, D. ; Gutekunst, N. ; Özdemir Aygenli, B. ; Ferry, L. ; Kirsh, O. ; Laisné, M. ; Scelfo, A. ; Ugur, E. ; Arimondo, P.B. ; Leonhardt, H. ; Kanemaki, M.T. ; Bartke, T. ; Fachinetti, D. ; Jeltsch, A. ; Ito, T. ; Defossez, P.A.
Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells.Lukauskas, S. ; Tvardovskiy, A. ; Nguyen, N.V. ; Stadler, M. ; Faull, P. ; Ravnsborg, T. ; Özdemir Aygenli, B. ; Dornauer, S. ; Flynn, H. ; Lindeboom, R.G.H. ; Barth, T.K. ; Brockers, K. ; Hauck, S.M. ; Vermeulen, M. ; Snijders, A.P. ; Müller, C.L. ; DiMaggio, P.A. ; Jensen, O.N. ; Schneider, R. ; Bartke, T.
Decoding chromatin states by proteomic profiling of nucleosome readers.Basu, S. ; Shukron, O. ; Hall, D.W. ; Parutto, P. ; Ponjavic, A. ; Shah, D.I. ; Boucher, W. ; Lando, D. ; Zhang, W. ; Reynolds, N. ; Sober, L.H. ; Jartseva, A. ; Ragheb, R. ; Ma, X. ; Cramard, J. ; Floyd, R. ; Balmer, J. ; Drury, T.A. ; Carr, A.R. ; Needham, L.M. ; Aubert, A. ; Communie, G. ; Gor, K. ; Steindel, M. ; Morey, L. ; Blanco, E. ; Bartke, T. ; di Croce, L. ; Berger, I. ; Schaffitzel, C. ; Lee, S.F. ; Stevens, T.J. ; Klenerman, D. ; Hendrich, B.D. ; Holcman, D. ; Laue, E.D.
Publisher Correction: Live-cell three-dimensional single-molecule tracking reveals modulation of enhancer dynamics by NuRD.Basu, S. ; Shukron, O. ; Hall, D. ; Parutto, P. ; Ponjavic, A. ; Shah, D. ; Boucher, W. ; Lando, D. ; Zhang, W. ; Reynolds, N. ; Sober, L.H. ; Jartseva, A. ; Ragheb, R. ; Ma, X. ; Cramard, J. ; Floyd, R. ; Balmer, J. ; Drury, T.A. ; Carr, A.R. ; Needham, L.M. ; Aubert, A. ; Communie, G. ; Gor, K. ; Steindel, M. ; Morey, L. ; Blanco, E. ; Bartke, T. ; di Croce, L. ; Berger, I. ; Schaffitzel, C. ; Lee, S.F. ; Stevens, T.J. ; Klenerman, D. ; Hendrich, B.D. ; Holcman, D. ; Laue, E.D.
Live-cell three-dimensional single-molecule tracking reveals modulation of enhancer dynamics by NuRD.Gaggioli, V. ; Lo, C.S.Y. ; Reveron-Gomez, N. ; Jasencakova, Z. ; Domenech, H. ; Nguyen, H. ; Sidoli, S. ; Tvardovskiy, A. ; Uruci, S. ; Slotman, J.A. ; Chai, Y. ; Gonçalves, J.G.S.C.S. ; Manolika, E.M. ; Jensen, O.N. ; Wheeler, D. ; Sridharan, S. ; Chakrabarty, S. ; Demmers, J. ; Kanaar, R. ; Groth, A. ; Taneja, N.
Dynamic de novo heterochromatin assembly and disassembly at replication forks ensures fork stability.Guthmann, M. ; Qian, C. ; Gialdini, I. ; Nakatani, T. ; Ettinger, A. ; Schauer, T. ; Kukhtevich, I. ; Schneider, R. ; Lamb, D.C. ; Burton, A. ; Torres-Padilla, M.E.
A change in biophysical properties accompanies heterochromatin formation in mouse embryos.Nieborak, A. ; Lukauskas, S. ; Capellades, J. ; Heyn, P. ; Santos, G.S. ; Motzler, K. ; Zeigerer, A. ; Bester, R. ; Protzer, U. ; Schelter, F. ; Wagner, M. ; Carell, T. ; Hruscha, A. ; Schmid, B. ; Yanes, O. ; Schneider, R.
Depletion of pyruvate kinase (PK) activity causes glycolytic intermediate imbalances and reveals a PK-TXNIP regulatory axis.Bannister, A.J. ; Schneider, R. ; Varga-Weisz, P.
Editorial: Colyn Crane-Robinson (1935-2023).Karl, L.A. ; Galanti, L. ; Bantele, S.C. ; Metzner, F. ; Šafarić, B. ; Rajappa, L. ; Foster, B. ; Pires, V.B. ; Bansal, P. ; Chacin, E. ; Basquin, J. ; Duderstadt, K.E. ; Kurat, C.F. ; Bartke, T. ; Hopfner, K.P. ; Pfander, B.
A SAM-key domain required for enzymatic activity of the Fun30 nucleosome remodeler.Weiß, M. ; Chanou, A. ; Schauer, T. ; Tvardovskiy, A. ; Meiser, S. ; König, A.-C. ; Schmidt, T. ; Kruse, E. ; Ummethum, H. ; Trauner, M. ; Werner, M. ; Lalonde, M. ; Hauck, S.M. ; Scialdone, A. ; Hamperl, S.
Single-copy locus proteomics of early- and late-firing DNA replication origins identifies a role of Ask1/DASH complex in replication timing control.Kukhtevich, I. ; Rivero-Romano, M. ; Rakesh, N. ; Bheda, P. ; Chadha, Y. ; Rosales-Becerra, P. ; Hamperl, S. ; Bureik, D. ; Dornauer, S. ; Dargemont, C. ; Kirmizis, A. ; Schmoller, K.M. ; Schneider, R.
Quantitative RNA imaging in single live cells reveals age-dependent asymmetric inheritance.Schuh, L. ; Kukhtevich, I. ; Bheda, P. ; Schulz, M. ; Bordukova, M. ; Schneider, R. ; Marr, C.
Altered expression response upon repeated gene repression in single yeast cells.Wang, X. ; Rosikiewicz, W. ; Sedkov, Y. ; Mondal, B. ; Martinez, T. ; Kallappagoudar, S. ; Tvardovskiy, A. ; Bajpai, R. ; Xu, B. ; Pruett-Miller, S.M. ; Schneider, R. ; Herz, H.M.
The MLL3/4 complexes and MiDAC co-regulate H4K20ac to control a specific gene expression program.Tvardovskiy, A. ; Nguyen, N. ; Bartke, T.
Identifying specific protein interactors of nucleosomes carrying methylated histones using quantitative mass spectrometry.Schmoller, K.M. ; Lanz, M.C. ; Kim, J. ; Koivomagi, M. ; Qu, Y. ; Tang, C. ; Kukhtevich, I. ; Schneider, R. ; Rudolf, F. ; Moreno, D.F. ; Aldea, M. ; Lucena, R. ; Skotheim, J.M.
Whi5 is diluted and protein synthesis does not dramatically increase in pre-Start G1.Yakimov, A.S. ; Denisov, I.A. ; Bukatin, A.S. ; Lukyanenko, K.A. ; Belousov, K.I. ; Kukhtevich, I. ; Esimbekova, E.N. ; Evstrapov, A.A. ; Belobrov, P.
Droplet microfluidic device for chemoenzymatic sensing.Stolz, P. ; Mantero, A.S. ; Tvardovskiy, A. ; Ugur, E. ; Wange, L.E. ; Mulholland, C.B. ; Cheng, Y. ; Wierer, M. ; Enard, W. ; Schneider, R. ; Bartke, T. ; Leonhardt, H. ; Elsässer, S.J. ; Bultmann, S.
TET1 regulates gene expression and repression of endogenous retroviruses independent of DNA demethylation.Günsel, G.G. ; Conlon, T.M. ; Jeridi, A. ; Kim, R. ; Ertüz, Z. ; Lang, N.J. ; Ansari, M. ; Novikova, M. ; Jiang, D. ; Strunz, M. ; Gaianova, M. ; Hollauer, C. ; Gabriel, C. ; Angelidis, I. ; Doll, S. ; Pestoni, J. ; Edelmann, S.L. ; Kohlhepp, M.S. ; Guillot, A. ; Bassler, K. ; Van Eeckhoutte, H.P. ; Kayalar, Ö. ; Konyalilar, N. ; Kanashova, T. ; Rodius, S. ; Ballester-Lopez, C. ; Genes Robles, C.M. ; Smirnova, N.F. ; Rehberg, M. ; Agarwal, C. ; Krikki, I. ; Piavaux, B. ; Verleden, S.E. ; Vanaudenaerde, B. ; Königshoff, M. ; Dittmar, G. ; Bracke, K.R. ; Schultze, J.L. ; Watz, H. ; Eickelberg, O. ; Stöger, T. ; Burgstaller, G. ; Tacke, F. ; Heissmeyer, V. ; Rinkevich, Y. ; Bayram, H. ; Schiller, H. B. ; Conrad, M. ; Schneider, R. ; Yildirim, A.Ö.
The arginine methyltransferase PRMT7 promotes extravasation of monocytes resulting in tissue injury in COPD.Millán-Zambrano, G. ; Burton, A. ; Bannister, A.J. ; Schneider, R.
Histone post-translational modifications - cause and consequence of genome function.Skalska, L. ; Begley, V. ; Beltran, M. ; Lukauskas, S. ; Khandelwal, G. ; Faull, P. ; Bhamra, A. ; Tavares, M. ; Wellman, R. ; Tvardovskiy, A. ; Foster, B. ; Ruiz de Los Mozos, I. ; Herrero, J. ; Surinova, S. ; Snijders, A.P. ; Bartke, T. ; Jenner, R.G.
Nascent RNA antagonizes the interaction of a set of regulatory proteins with chromatin.Nitsch, S. ; Zorro Shahidian, L. ; Schneider, R.
Histone acylations and chromatin dynamics: Concepts, challenges, and links to metabolism.Santos-Rosa, H. ; Millán-Zambrano, G. ; Han, N. ; Leonardi, T. ; Klimontova, M. ; Nasiscionyte, S. ; Pandolfini, L. ; Tzelepis, K. ; Bartke, T. ; Kouzarides, T.
Methylation of histone H3 at lysine 37 by Set1 and Set2 prevents spurious DNA replication.Belousov, K.I. ; Filatov, N.A. ; Kukhtevich, I. ; Kantsler, V. ; Evstrapov, A.A. ; Bukatin, A.S.
An asymmetric flow-focusing droplet generator promotes rapid mixing of reagents.Zorro Shahidian, L. ; Haas, M. ; Le Gras, S. ; Nitsch, S. ; Mourao, A. ; Geerlof, A. ; Margueron, R. ; Michaelis, J. ; Daujat, S. ; Schneider, R.
Succinylation of H3K122 destabilizes nucleosomes and enhances transcription.Petryk, N. ; Bultmann, S. ; Bartke, T. ; Defossez, P.-A.
Staying true to yourself: Mechanisms of DNA methylation maintenance in mammalsBheda, P. ; Aguilar-Gómez, D. ; Kukhtevich, I. ; Becker, J. ; Charvin, G. ; Kirmizis, A. ; Schneider, R.
Microfluidics for single-cell lineage tracking over time to characterize transmission of phenotypes in Saccharomyces cerevisiae.Ignatova, V.V. ; Kaiser, S. ; Ho, J.S.Y. ; Bing, X. ; Stolz, P. ; Tan, Y.X. ; Lee, C.L. ; Gay, F.P.H. ; Lastres, P.R. ; Gerlini, R. ; Rathkolb, B. ; Aguilar-Pimentel, J.A. ; Sanz-Moreno, A. ; Klein-Rodewald, T. ; Calzada-Wack, J. ; Ibragimov, E. ; Valenta, M. ; Lukauskas, S. ; Pavesi, A. ; Marschall, S. ; Leuchtenberger, S. ; Fuchs, H. ; Gailus-Durner, V. ; Hrabě de Angelis, M. ; Bultmann, S. ; Rando, O.J. ; Guccione, E. ; Kellner, S.M. ; Schneider, R.
METTL6 is a tRNA m3C methyltransferase that regulates pluripotency and tumor cell growth.Bheda, P. ; Kirmizis, A. ; Schneider, R.
The past determines the future: Sugar source history and transcriptional memory.Strunz, M. ; Simon, L. ; Ansari, M. ; Kathiriya, J.J. ; Angelidis, I. ; Mayr, C. ; Tsidiridis, G. ; Lange, M. ; Mattner, L. ; Yee, M. ; Ogar, P. ; Sengupta, A. ; Kukhtevich, I. ; Schneider, R. ; Zhao, Z. ; Voss, C. ; Stöger, T. ; Neumann, J.H.L. ; Hilgendorff, A. ; Behr, J. ; O'Reilly, M. ; Lehmann, M. ; Burgstaller, G. ; Königshoff, M. ; Chapman, H.A. ; Theis, F.J. ; Schiller, H. B.
Alveolar regeneration through a Krt8+transitional stem cell state that persists in human lung fibrosis.Kukhtevich, I. ; Lohrberg, N. ; Padovani, F. ; Schneider, R. ; Schmoller, K.M.
Cell size sets the diameter of the budding yeast contractile ring.Bheda, P. ; Aguilar-Gomez, D. ; Becker, N.B. ; Becker, J. ; Stavrou, E. ; Kukhtevich, I. ; Höfer, T. ; Maerkl, S. ; Charvin, G. ; Marr, C. ; Kirmizis, A. ; Schneider, R.
Single-cell tracing dissects regulation of maintenance and inheritance of transcriptional reinduction memory.Bartke, T. ; Schneider, R.
You are what you eat-How nutrition and metabolism shape the genome through epigenetics.Strunz, M. ; Simon, L. ; Ansari, M. ; Mattner, L. ; Angelidis, I. ; Mayr, C. ; Kathiriya, J. ; Yee, M. ; Ogar, P. ; Voss, C. ; Stöger, T. ; Kukhtevich, I. ; Schneider, R. ; Lehmann, M. ; Koenigshoff, M. ; Burgstaller, G. ; O'Reilly, M. ; Chapman, H. ; Theis, F.J. ; Schiller, H. B.
Fate trajectory modeling reveals convergence of airway derived progenitors and AT2 cells on transient KRT8+alveolar cell state during lung regeneration.Ignatova, V.V. ; Stolz, P. ; Kaiser, S. ; Gustafsson, T.H. ; Lastres, P.R. ; Sanz-Moreno, A. ; Cho, Y.-L. ; Amarie, O.V. ; Aguilar-Pimentel, J.A. ; Klein-Rodewald, T. ; Calzada-Wack, J. ; Becker, L. ; Marschall, S. ; Kraiger, M. ; Garrett, L. ; Seisenberger, C. ; Hölter, S.M. ; Borland, K. ; Van De Logt, E. ; Jansen, P.W.T.C. ; Baltissen, M.P. ; Valenta, M. ; Vermeulen, M. ; Wurst, W. ; Gailus-Durner, V. ; Fuchs, H. ; Hrabě de Angelis, M. ; Rando, O.J. ; Kellner, S.M. ; Bultmann, S. ; Schneider, R.
The rRNA m6A methyltransferase METTL5 is involved in pluripotency and developmental programs.Beltran, M. ; Tavares, M. ; Justin, N. ; Khandelwal, G. ; Ambrose, J. ; Foster, B. ; Worlock, K.B. ; Tvardovskiy, A. ; Kunzelmann, S. ; Herrero, J. ; Bartke, T. ; Gamblin, S.J. ; Wilson, J.R. ; Jenner, R.G.
Author Correction: G-tract RNA removes Polycomb repressive complex 2 from genes (Nature Structural & Molecular Biology, (2019), 26, 10, (899-909), 10.1038/s41594-019-0293-z).Beltran, M. ; Tavares, M. ; Justin, N. ; Khandelwal, G. ; Ambrose, J. ; Foster, B. ; Worlock, K.B. ; Kunzelmann, S. ; Herrero, J. ; Bartke, T. ; Gamblin, S.J. ; Wilson, J.R. ; Jenner, R.G.
G-tract RNA removes Polycomb repressive complex 2 from genes.Pellegrino, J. ; Shahjahanpour, A. ; Lukauskas, S. ; Olayo Alarcon, R. ; Ramakrishnan, A. ; Colomé-Tatché, M. ; Schneider, R.
Glucose starvation in Huh7 cells triggers a transcriptional memory.Ignatova, V.V. ; Jansen, P.W.T.C. ; Baltissen, M.P. ; Vermeulen, M. ; Schneider, R.
The interactome of a family of potential methyltransferases in HeLa cells.Bartke, T. ; Groth, A.
A chromatin-based signalling mechanism directs the switch from mutagenic to error-free repair of DNA double strand breaks.Nakamura, K. ; Saredi, G. ; Becker, J.R. ; Foster, B. ; Nguyen, N.V. ; Beyer, T.E. ; Cesa, L.C. ; Faull, P.A. ; Lukauskas, S. ; Frimurer, T. ; Chapman, J.R. ; Bartke, T. ; Groth, A.
H4K20meO recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.Foster, B. ; Stolz, P. ; Mulholland, C.B. ; Montoya, A. ; Kramer, H. ; Bultmann, S. ; Bartke, T.
Critical role of the UBL domain in stimulating the E3 ubiquitin ligase activity of UHRF1 toward chromatin.Andrau, J.-C. ; Geyer, M. ; Hermeking, H. ; Hölzel, M. ; Imhof, A. ; Murphy, S. ; Schneider, R.
Regulation of transcription: RNA Pol II and Myc.Makowski, M.M. ; Grawe, C. ; Foster, B. ; Nguyen, N.V. ; Bartke, T. ; Vermeulen, M.
Global profiling of protein-DNA and protein-nucleosome binding affinities using quantitative mass spectrometry.Bräuer, K. ; Brockers, K. ; Moneer, J. ; Feuchtinger, A. ; Wollscheid-Lengeling, E. ; Lengeling, A. ; Wolf, A.
Phylogenetic and genomic analyses of the ribosomal oxygenases Riox1 (No66) and Riox2 (Mina53) provide new insights into their evolution.Nieborak, A. ; Schneider, R.
Metabolic intermediates - Cellular messengers talking to chromatin modifiers.Kebede, A.F. ; Nieborak, A. ; Shahidian, L.Z. ; Le Gras, S. ; Richter, F.M. ; Gomez, D.A. ; Baltissen, M.P. ; Meszaros, G. ; Magliarelli, H.F. ; Taudt, A. ; Margueron, R. ; Colomé-Tatché, M. ; Ricci, R. ; Daujat, S. ; Vermeulen, M. ; Mittler, G. ; Schneider, R.
Histone propionylation is a mark of active chromatin.Izzo, A. ; Ziegler-Birling, C. ; Hill, P.W.S. ; Brondani, L. ; Hajkova, P. ; Torres-Padilla, M.E. ; Schneider, R.
Dynamic changes in H1 subtype composition during epigenetic reprogramming.Scahill, C.M. ; Digby, Z. ; Sealy, I.M. ; Wojciechowska, S. ; White, R.J. ; Collins, J.E. ; Stemple, D.L. ; Bartke, T. ; Mathers, M.E. ; Patton, E.E. ; Busch-Nentwich, E.M.
Loss of the chromatin modifier Kdm2aa causes BrafV-600E -independent spontaneous melanoma in zebrafish.Col, E. ; Hoghoughi, N. ; Dufour, S. ; Penin, J. ; Koskas, S. ; Faure, V. ; Ouzounova, M. ; Hernandez-Vargash, H. ; Reynoird, N. ; Daujat, S. ; Folco, E.J. ; Vigneron, M. ; Schneider, R. ; Verdel, A. ; Khochbin, S. ; Herceg, Z. ; Caron, C. ; Vourc'h, C.
Bromodomain factors of BET family are new essential actors of pericentric heterochromatin transcriptional activation in response to heat shock.Chendeb, M. ; Schneider, R. ; Davidson, I. ; Fadloun, A.
Selective elimination of long INterspersed element-1 expressing tumour cells by targeted expression of the HSV-TK suicide gene.Pradeepa, M.M. ; Grimes, G.R. ; Kumar, Y. ; Olley, G. ; Taylor, G.C.A. ; Schneider, R. ; Bickmore, W.A.
Histone H3 globular domain acetylation identifies a new class of enhancers.Lawrence, M. ; Daujat, S. ; Schneider, R.
Lateral thinking: How histone modifications regulate gene expression.Izzo, A. ; Schneider, R.
The role of linker histone H1 modifications in the regulation of gene expression and chromatin dynamics.Kabra, D.G. ; Pfuhlmann, K. ; García-Cáceres, C. ; Schriever, S.C. ; Casquero García, V. ; Kebede, A.F. ; Fuente-Martin, E. ; Trivedi, C. ; Heppner, K. ; Uhlenhaut, N.H. ; Legutko, B. ; Kabra, U.D. ; Gao, Y. ; Yi, C.-X. ; Quarta, C. ; Clemmensen, C. ; Finan, B. ; Müller, T.D. ; Meyer, C.W. ; Paez-Pereda, M. ; Stemmer, K. ; Woods, S.C. ; Perez-Tilve, D. ; Schneider, R. ; Olson, E.N. ; Tschöp, M.H. ; Pfluger, P.T.
Hypothalamic leptin action is mediated by histone deacetylase 5.Quarta, C. ; Schneider, R. ; Tschöp, M.H.
Epigenetic ON/OFF switches for obesity.Hergeth, S.P. ; Schneider, R.
The H1 linker histones: Multifunctional proteins beyond the nucleosomal core particle.Cohen, I.R. ; Peleg, R. ; Voronov, E. ; Tomas, M. ; Tudor, C. ; Wegner, M. ; Brodabi, L. ; Freudenberg, M. ; Mittler, G. ; Ferrando-May, E. ; Dinarello, C.A. ; Apte, R.N. ; Schneider, R.
IL-1α is a DNA damage sensor linking genotoxic stress signaling to sterile inflammation and innate immunity.Kebede, A.F. ; Schneider, R. ; Daujat, S.
Novel types and sites of histone modifications emerge as players in the transcriptional regulation contest.Ziegler-Birling, C. ; Daujat, S. ; Schneider, R. ; Torres-Padilla, M.E.
Dynamics of histone H3 acetylation in the nucleosome core during mouse pre-implantation development.Sijare, F. ; Geißler, A.L. ; Fichter, C.D. ; Hergeth, S.P. ; Bogatyreva, L. ; Hauschke, D. ; Schneider, R. ; Werner, M. ; Lassmann, S.
Aurora B expression and histone variant H1.4S27 phosphorylation are no longer coordinated during metaphase in aneuploid colorectal carcinomas.di Cerbo, V. ; Mohn, F. ; Ryan, D.P. ; Montellier, E. ; Kacem, S. ; Tropberger, P. ; Kallis, E. ; Holzner, M. ; Hoerner, L. ; Feldmann, A. ; Richter, F.M. ; Bannister, A.J. ; Mittler, G. ; Michaelis, J. ; Khochbin, S. ; Feil, R. ; Schuebeler, D. ; Owen-Hughes, T. ; Daujat, S. ; Schneider, R.
Acetylation of histone H3 at lysine 64 regulates nucleosome dynamics and facilitates transcription.Biterge, B. ; Richter, F.M. ; Mittler, G. ; Schneider, R.
Methylation of histone H4 at aspartate 24 by protein L-isoaspartate O-methyltransferase (PCMT1) links histone modifications with protein homeostasis.Bheda, P. ; Schneider, R.
Epigenetics reloaded: The single-cell revolution.Biterge, B. ; Schneider, R.
Histone variants: Key players of chromatin.Tropberger, P. ; Pott, S. ; Keller, C. ; Kamieniarz-Gdula, K. ; Caron, M. ; Richter, F.M. ; Li, G. ; Mittler, G. ; Liu, E.T. ; Bühler, M. ; Margueron, R. ; Schneider, R.
Regulation of transcription through acetylation of H3K122 on the lateral surface of the histone octamer.Izzo, A. ; Kamieniarz-Gdula, K. ; Ramírez, F. ; Noureen, N. ; Kind, J. ; Manke, T. ; van Steensel, B. ; Schneider, R.
The genomic landscape of the somatic linker histone subtypes H1.1 to H1.5 in human cells.Tropberger, P. ; Schneider, R.
Scratching the (lateral) surface of chromatin regulation by histone modifications.di Cerbo, V. ; Schneider, R.
Cancers with wrong HATs: The impact of acetylation.Fejer, G. ; Wegner, M.D. ; Györy, I. ; Cohen, I.R. ; Engelhard, P. ; Voronov, E. ; Manke, T. ; Ruzsics, Z. ; Dölken, L. ; Prazeres da Costa, O. ; Branzk, N. ; Huber, M. ; Prasse, A. ; Schneider, R. ; Apte, R.N. ; Galanos, C. ; Freudenberg, M.A.
Nontransformed, GM-CSF-dependent macrophage lines are a unique model to study tissue macrophage functions.Waldmann, T. ; Schneider, R.
Targeting histone modifications - epigenetics in cancer.Lange, U.C. ; Siebert, S. ; Wossidlo, M. ; Weiss, T. ; Ziegler-Birling, C. ; Walter, J. ; Torres-Padilla, M.E. ; Daujat, S. ; Schneider, R.
Dissecting the role of H3K64me3 in mouse pericentromeric heterochromatin.Kamieniarz, K. ; Izzo, A. ; Dundr, M. ; Tropberger, P. ; Ozretic, L. ; Kirfel, J. ; Scheer, E. ; Tropel, P. ; Wisniewski, J.R. ; Tora, L. ; Viville, S. ; Buettner, R. ; Schneider, R.
A dual role of linker histone H1.4 Lys 34 acetylation in transcriptional activation.Öberg, C. ; Izzo, A. ; Schneider, R. ; Wrange, Ö. ; Belikov, S.
Linker histone subtypes differ in their effect on nucleosomal spacing in vivo.Peifer, M. ; Fernández-Cuesta, L. ; Sos, M.L. ; George, J. ; Seidel, D. ; Kasper, L.H. ; Plenker, D. ; Leenders, F. ; Sun, R. ; Zander, T. ; Menon, R. ; Koker, M. ; Dahmen, I. ; Müller, C. ; di Cerbo, V. ; Schildhaus, H.U. ; Altmüller, J. ; Baessmann, I. ; Becker, C. ; de Wilde, B. ; Vandesompele, J. ; Böhm, D. ; Ansén, S. ; Gabler, F. ; Wilkening, I. ; Heynck, S. ; Heuckmann, J.M. ; Lu, X. ; Carter, S.L. ; Cibulskis, K. ; Banerji, S. ; Getz, G. ; Park, K.S. ; Rauh, D. ; Grütter, C. ; Fischer, M. ; Pasqualucci, L. ; Wright, G. ; Wainer, Z. ; Russell, P. ; Petersen, I. ; Chen, Y. ; Stoelben, E. ; Ludwig, C. ; Schnabel, P.A. ; Hoffmann, H. ; Muley, T. ; Brockmann, M.M. ; Engel-Riedel, W. ; Muscarella, L.A. ; Fazio, V.M. ; Groen, H.J.M. ; Timens, W. ; Sietsma, H. ; Thunnissen, E. ; Smit, E. ; Heideman, D.A. ; Snijders, P.J. ; Cappuzzo, F. ; Ligorio, C. ; Damiani, S. ; Field, J. ; Solberg, S. ; Brustugun, O.T. ; Lund-Iversen, M. ; Sänger, J. ; Clement, J.H. ; Soltermann, A. ; Moch, H. ; Weder, W. ; Solomon, B. ; Soria, J.C. ; Validire, P. ; Besse, B. ; Brambilla, E. ; Brambilla, C. ; Lantuejoul, S. ; Lorimier, P. ; Schneider, P.M. ; Hallek, M. ; Pao, W. ; Meyerson, M. ; Sage, J. ; Shendure, J. ; Schneider, R. ; Büttner, R. ; Wolf, J. ; Nürnberg, P. ; Perner, S. ; Heukamp, L.C. ; Brindle, P.K. ; Haas, S. ; Thomas, R.K.
Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer.Talbert, P.B. ; Ahmad, K. ; Almouzni, G. ; Ausió, J. ; Berger, F. ; Bhalla, P.L. ; Bonner, W.M. ; Cande, W.Z. ; Chadwick, B.P. ; Chan, S.W. ; Cross, G.A. ; Cui, L. ; Dimitrov, S.I. ; Doenecke, D. ; Eirin-López, J.M. ; Gorovsky, M.A. ; Hake, S.B. ; Hamkalo, B.A. ; Holec, S. ; Jacobsen, S.E. ; Kamieniarz, K. ; Khochbin, S. ; Ladurner, A.G. ; Landsman, D. ; Latham, J.A. ; Loppin, B. ; Malik, H.S. ; Marzluff, W.F. ; Pehrson, J.R. ; Postberg, J. ; Schneider, R. ; Singh, M.B. ; Smith, M.M. ; Thompson, E.E. ; Torres-Padilla, M.E. ; Tremethick, D.J. ; Turner, B.M. ; Waterborg, J.H. ; Wollmann, H. ; Yelagandula, R. ; Zhu, B.M. ; Henikoff, S.
A unified phylogeny-based nomenclature for histone variants.Hergeth, S.P. ; Dundr, M. ; Tropberger, P. ; Zee, B.M. ; Garcia, B.A. ; Daujat, S. ; Schneider, R.
Isoform-specific phosphorylation of human linker histone H1.4 in mitosis by the kinase Aurora B.Kappes, F. ; Waldmann, T. ; Mathew, V. ; Yu, J. ; Zhang, L. ; Khodadoust, M.S. ; Chinnaiyan, A.M. ; Luger, K. ; Erhardt, S. ; Schneider, R. ; Markovitz, D.M.
The DEK oncoprotein is a Su(var) that is essential to heterochromatin integrity.Cohen, I.R. ; Poreba, E. ; Kamieniarz, K. ; Schneider, R.
Histone modifiers in cancer: Friends or foes?Waldmann, T. ; Izzo, A. ; Kamieniarz, K. ; Richter, F.M. ; Vogler, C. ; Sarg, B. ; Lindner, H. ; Young, N.L. ; Mittler, G. ; Garcia, B.A. ; Schneider, R.
Methylation of H2AR29 is a novel repressive PRMT6 target.Weiss, T. ; Hergeth, S.P. ; Zeissler, U. ; Izzo, A. ; Tropberger, P. ; Zee, B.M. ; Dundr, M. ; Garcia, B.A. ; Daujat, S. ; Schneider, R.
Histone H1 variant-specific lysine methylation by G9a/KMT1C and Glp1/KMT1D.Infantino, S. ; Benz, B. ; Waldmann, T. ; Jung, M. ; Schneider, R. ; Reth, M.
Arginine methylation of the B cell antigen receptor promotes differentiation.Izzo, A. ; Schneider, R.
Chatting histone modifications in mammals.Plazas-Mayorca, M.D. ; Bloom, J.S. ; Zeissler, U. ; Leroy, G. ; Young, N.L. ; DiMaggio, P.A. ; Krugylak, L. ; Schneider, R. ; Garcia, B.A.
Quantitative proteomics reveals direct and indirect alterations in the histone code following methyltransferase knockdown.Vogler, C. ; Huber, C. ; Waldmann, T. ; Ettig, R. ; Braun, L. ; Izzo, A. ; Daujat, S. ; Chassignet, I. ; Lopez-Contreras, A.J. ; Fernandez-Capetillo, O. ; Dundr, M. ; Rippe, K. ; Längst, G. ; Schneider, R.
Histone H2A C-terminus regulates chromatin dynamics, remodeling, and histone H1 binding.Tropberger, P. ; Schneider, R.
Going global: novel histone modifications in the globular domain of H3.Daujat, S. ; Weiss, T. ; Mohn, F. ; Lange, U.C. ; Ziegler-Birling, C. ; Zeissler, U. ; Lappe, M. ; Schübeler, D. ; Torres-Padilla, M.E. ; Schneider, R.
H3K64 trimethylation marks heterochromatin and is dynamically remodeled during developmental reprogramming.Kamieniarz, K. ; Schneider, R.
Tools to tackle protein acetylation.Hajkova, P. ; Ancelin, K. ; Waldmann, T. ; Lacoste, N. ; Lange, U.C. ; Cesari, F. ; Lee, C. ; Almouzni, G. ; Schneider, R. ; Surani, M.A.
Chromatin dynamics during epigenetic reprogramming in the mouse germ line.Izzo, A. ; Kamieniarz, K. ; Schneider, R.
The histone H1 family: Specific members, specific functions?Laue, K. ; Daujat, S. ; Crump, J.G. ; Plaster, N. ; Roehl, H.H. ; Kimmel, C.B. ; Schneider, R. ; Hammerschmidt, M.
The multidomain protein Brpf1 binds histones and is required for Hox gene expression and segmental identity.Lange, U.C. ; Adams, D.J. ; Lee, C. ; Barton, S.J. ; Schneider, R. ; Bradley, A. ; Surani, M.A.
Normal germ line establishment in mice carrying a deletion of the Ifitm/Fragilis gene family cluster.Wissmann, M. ; Yin, N. ; Müller, J.M. ; Greschik, H. ; Fodor, B.D. ; Jenuwein, T. ; Vogler, C. ; Schneider, R. ; Günther, T. ; Buettner, R. ; Metzger, E. ; Schule, R.
Cooperative demethylation by JMJD2C and LSD1 promotes androgen receptor-dependent gene expression.Schneider, R. ; Grosschedl, R.
Dynamics and interplay of nuclear architecture, genome organization, and gene expression.Ancelin, K. ; Lange, U.C. ; Hajkova, P. ; Schneider, R. ; Bannister, A.J. ; Kouzarides, T. ; Surani, M.A.
Blimp1 associates with Prmt5 and directs histone arginine methylation in mouse germ cells.Metzger, E. ; Wissmann, M. ; Yin, N. ; Müller, J.M. ; Schneider, R. ; Peters, A.H. ; Günther, T. ; Buettner, R. ; Schule, R.
LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription.Daujat, S. ; Zeissler, U. ; Waldmann, T. ; Happel, N. ; Schneider, R.
HP1 binds specifically to Lys26-methylated histone H1.4, whereas simultaneous Ser27 phosphorylation blocks HP1 binding.Bannister, A.J. ; Schneider, R. ; Myers, F.A. ; Thorne, A.W. ; Crane-Robinson, C. ; Kouzarides, T.
Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes.Schneider, R. ; Bannister, A.J. ; Myers, F.A. ; Thorne, A.W. ; Crane-Robinson, C. ; Kouzarides, T.
Histone H3 lysine 4 methylation patterns in higher eukaryotic genes.Schneider, R. ; Bannister, A.J. ; Weise, C. ; Kouzarides, T.
Direct binding of INHAT to H3 tails disrupted by modifications.Cuthbert, G.L. ; Daujat, S. ; Snowden, A.W. ; Erdjument-Bromage, H. ; Hagiwara, T. ; Yamada, M. ; Schneider, R. ; Gregory, P.D. ; Tempst, P. ; Bannister, A.J. ; Kouzarides, T.
Histone deimination antagonizes arginine methylation.Erhardt, S. ; Su, I.H. ; Schneider, R. ; Barton, S.J. ; Bannister, A.J. ; Perez-Burgos, L. ; Jenuwein, T. ; Kouzarides, T. ; Tarakhovsky, A. ; Surani, M.A.
Consequences of the depletion of zygotic and embryonic enhancer of zeste 2 during preimplantation mouse development.Santos-Rosa, H. ; Schneider, R. ; Bernstein, B.E. ; Karabetsou, N. ; Morillon, A. ; Weise, C. ; Schreiber, S.L. ; Mellor, J. ; Kouzarides, T.
Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin.Auner, H. ; Buckle, M. ; Deufel, A. ; Kutateladze, T. ; Lazarus, L. ; Mavathur, R. ; Muskhelishvili, G. ; Pemberton, I. ; Schneider, R. ; Travers, A.
Mechanism of transcriptional activation by FIS: role of core promoter structure and DNA topology.Schneider, R. ; Bannister, A.J.
Protein N-methyltransferase assays in the study of gene transcription.Bernstein, B.E. ; Humphrey, E.L. ; Erlich, R.L. ; Schneider, R. ; Bouman, P. ; Liu, J.S. ; Kouzarides, T. ; Schreiber, S.L.
Methylation of histone H3 Lys 4 in coding regions of active genes.Schneider, R. ; Bannister, A.J. ; Kouzarides, T.
Unsafe SETs: Histone lysine methyltransferases and cancer.Bannister, A.J. ; Schneider, R. ; Kouzarides, T.
Histone methylation: Dynamic or static?Santos-Rosa, H. ; Schneider, R. ; Bannister, A.J. ; Sherriff, J. ; Bernstein, B.E. ; Emre, N.C. ; Schreiber, S.L. ; Mellor, J. ; Kouzarides, T.
Active genes are tri-methylated at K4 of histone H3.Nielsen, S.J. ; Schneider, R. ; Bauer, U.M. ; Bannister, A.J. ; Morrison, A. ; O'Carroll, D. ; Firestein, R. ; Cleary, M. ; Jenuwein, T. ; Herrera, R.E. ; Kouzarides, T.
Rb targets histone H3 methylation and HP1 to promoters.Travers, A. ; Schneider, R. ; Muskhelishvili, G.
DNA supercoiling and transcription in Escherichia coli: The FIS connection.Schneider, R. ; Lurz, R. ; Lüder, G. ; Tolksdorf, C. ; Travers, A. ; Muskhelishvili, G.
An architectural role of the Escherichia coli chromatin protein FIS in organising DNA.Nasser, W. ; Schneider, R. ; Travers, A. ; Muskhelishvili, G.
CRP modulates fis transcription by alternate formation of activating and repressing nucleoprotein complexes.Zechiedrich, E.L. ; Khodursky, A.B. ; Bachellier, S. ; Schneider, R. ; Chen, D. ; Lilley, D.M. ; Cozzarelli, N.R.
Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli.Schneider, R. ; Travers, A. ; Muskhelishvili, G.
The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA.Schneider, R. ; Travers, A. ; Kutateladze, T. ; Muskhelishvili, G.
A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli.Schneider, R. ; Travers, A. ; Muskhelishvili, G.
FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli.