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Helmholtz Munich I Daniela Barreto

HistoGPT: Advancing AI-Powered Pathology Reporting in Dermatopathology

AI, Featured Publication, Health AI,

A new artificial intelligence (AI) tool, HistoGPT, is set to transform the field of dermatopathology by automating the process of generating high-quality pathology reports from histology images. Developed by a multidisciplinary team led by Helmholtz Munich researchers Dr. Tingying Peng and Dr. Carsten Marr, and dermatologists at University Hospital Muenster and University of Freiburg, Dr. Stephan A. Braun and Dr. Kilian Eyerich, this technology streamlines the traditionally labor-intensive and time-consuming process of pathology reporting, marking a significant advancement in the diagnosis of dermatological diseases, including cancer.

The Challenge of Traditional Histopathology Reporting

Histopathology, the gold standard for diagnosing many diseases, including cancer, requires pathologists to meticulously analyze tissue samples under a microscope and produce detailed reports. This process, although essential, is often non-standardized and demands significant time and expertise. The growing demand for timely and accurate diagnoses, paired with a shortage of skilled professionals, has made the task increasingly challenging for healthcare systems worldwide.

Introducing HistoGPT: A Foundation Model for AI-Powered Pathology Reports

To address these challenges, HistoGPT leverages the power of AI to automate the process of report generation. As a foundation model*, it has been trained on a vast dataset of dermatopathology cases, enabling it to generalize across different clinical scenarios. This vision-language model** can generate pathology reports directly from full-resolution histology images, offering a standardized, efficient, and highly accurate solution. HistoGPT was trained on an extensive dataset consisting of 15,129 whole slide images from 6,705 dermatology patients from the Dermatology Clinics of the Technical University of Munich, alongside their corresponding pathology reports, enabling the model to learn complex patterns and nuances within dermatopathology data.

"HistoGPT's ability to generate pathology reports that are on par with human-written reports represents a significant achievement," said Tingying Peng, Helmholtz AI young investigator group leader and co-corresponding author of the study. "After careful testing using language analysis tools and expert reviews, we have confirmed that HistoGPT's reports are very similar in quality to those written by experienced pathologists, especially for common and well-known types of cancer."

Proven Accuracy in Clinical Applications

A multi-center study demonstrated the robust capabilities of HistoGPT in real-world scenarios. The model successfully predicted critical tumor characteristics, including tumor subtypes, tumor thickness, and tumor margins, in a zero-shot fashion – meaning it could accurately analyze new cases without requiring additional training. Particularly, HistoGPT-generated reports were evaluated at three leading medical institutions: the Mayo Clinic in the United States, the University Hospital Münster in Germany, and the Radboud University Medical Center in the Netherlands. The results confirmed that HistoGPT produced accurate diagnostic reports for the most common neoplastic epithelial lesions, including basal cell carcinoma, melanocytic nevus, actinic keratosis, and squamous cell carcinoma. The combination of flexibility and precision highlights the potential of foundation models like HistoGPT to assist in routine dermatopathology evaluations, ultimately enhancing diagnostic accuracy and efficiency.  

Transforming Dermatopathology with AI

“By automating routine aspects of the reporting process, HistoGPT has the potential to reduce the workload on pathologists, allowing them to focus on more complex and critical tasks,” said Manuel Tran, researcher at Helmholtz AI and the Technical University of Munich, and co-first author of the study. “This change could speed up diagnoses and ultimately lead to better patient outcomes.” The model’s ability to provide accurate, standardized reports makes it especially valuable in healthcare environments where there is high demand and limited resources, helping to improve efficiency and consistency in patient care.
 

*What is a foundation model?

A foundation model is a powerful AI trained on large amounts of data to recognize patterns and perform a wide range of tasks. For example, ChatGPT is a foundation model that can understand and generate text, helping with tasks like answering questions or holding conversations. Similarly, in healthcare, models like HistoGPT assist doctors by analyzing medical images and making diagnoses more quickly and accurately.

 

**What is a vision-language model?

A vision-language model is an AI that can understand both images and text. When analyzing a picture of a cancer cell, the AI can "see" the image and identify key features like a cell's shape, size, and irregularities. It can then describe what it observes, such as "This is a malignant cancer cell with irregular borders and enlarged nuclei." The model can also answer specific questions, like "What type of cancer is this cell likely to be?" By linking images with descriptive text, the model can assist doctors in analyzing medical images and generating detailed, accurate reports.
 

Original Publication

Tran et al., 2025: Generating dermatopathology reports from gigapixel whole slide images with HistoGPT. Nature Communications. DOI: https://doi.org/10.1038/s41467-025-60014-x