Portrait Li Deng

Head of Research Unit Microbial Diseases Prevention

Prof. Dr. Li Deng

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Academic Career and Research Areas

Li Deng is the Chair of ‘Prevention of Microbial Diseases’ at the Technical University of Munich (TUM) and Helmholtz Munich. She serves as the Director of the Central Institute for Infection Prevention at TUM and the Bavarian Competent Phage Therapy Center. Her research utilizes integrative approaches by combining single-cell technologies, culture-independent techniques, multi-omics, and machine learning. These methods allow her team to elucidate the fundamental mechanisms of phage-host interactions and their broader impact on human health and the environment.

 

She earned her PhD in Microbiology from the University of Bristol, UK, and her Bachelor of Environmental Science and Technology from Tsinghua University, China. After completing postdoctoral training in the United States, she joined Helmholtz Munich as the head of the highly competitive DFG Emmy Noether Junior Research Group and the Helmholtz Young Investigator Group. Her scientific excellence has been recognized by an ERC Starting Grant (2019), multiple international and EU consortium grants, and prestigious awards including the Helmholtz Distinguished Female Professor Prize in 2023. 

 

The Deng Lab investigates the human virome and phage-host dynamics to develop innovative phage-based therapeutics and diagnostic tools. These strategies focus on three primary goals:

  1. Combating the global challenge of multi-drug resistant (MDR) pathogens.

  2. Understanding and preventing dysbiosis-associated diseases.

  3. Modulating the human microbiota to treat complex conditions such as inflammatory bowel disease (IBD), colorectal cancer (CRC), graft-versus-host disease (GvHD), asthma and allergies.

     

To advance the clinical implementation of phage therapy in Germany, Prof. Dr. Deng’s team has developed highly efficient phage cocktails against critical pathogens. Additionally, she fosters strategic collaborations between scientists and physicians to establish a roadmap for the future of translational phage research and personalized medicine in Germany and beyond.

Professional Background

Since 07/2024

Director, Bavaria Competent Phage Therapy Center

Since 05/2023

Director, Central Institute of Disease Prevention, Technical University of Munich, Germany

Since 03/2022

Chair Professor (W3) of Microbial Disease Prevention, School of Life Sciences, Technical University of Munich, Germany

Since 03/2017

Young Investigator Group Leader, Institute of Virology, Helmholtz Munich, Germany

09/2016 - 02/2022

Emmy Noether Group Leader and TUM Junior Fellow, Helmholtz Munich and Technical University of Munich, Germany

07/2015 - 09/2016

Maternity and Parental leave

04/2012 - 06/2013

Maternity and Parental leave

12/2011 - 08/2015

Senior postdoc at the Institute of Groundwater Ecology, Helmholtz Munich, Germany

10/2008 - 10/2011

Postdoc at the Department of Ecology and Evolutional Biology, University of Arizona, USA

10/2004 - 10/2008

Ph.D. in Microbiology at the University of Bristol, U.K.

Thesis: Evidence for cyanophage active against bloom-forming freshwater cyanobacteria

10/2003 - 10/2004

M.Sc. in Environmental Sciences, University of Nottingham, U.K.

08/1998 - 01/2003

B.Sc. in Biological Sciences and B.Eng. in Environmental Engineering at the Tsinghua University, China

Honors and Awards

2023
Helmholtz Distinguished Female Professor Prize

Most important Publications

2024 Nature Cancer

Thiele Orberg E, Meedt E, Hiergeist A, Xue J, Heinrich P, Ghimire S, Miltiadous O, Lindner S, Schwarz A, Janssen K-P, Herhaus P, Verbeek M, van den Brink MRM, Weber D, Edinger M, Wolff D, Kleigrewe K, Herr W, Bassermann F, Gessner A, Deng L*, Holler E*, Poeck H*

Bacterial and Bacteriophage Consortia are Associated with Protective Intestinal Immuno-modulatory Meta-bolites in Allogeneic Stem Cell Transplantation Patients (5) 187–208.
2023

Luo S, Ru J, Khan Mirzaei M, Xue J, Peng X, Ralser A, Hadi JL, Mejías-Luque R, Gerhard M and Deng L*

Helicobacter pylori infection alters gut virome by expanding temperate phages linked to increased risk of colorectal cancer gutjnl-2023-330362. (IF: 31.795)
2023 Gut Microbes

Luo S, Ru J, Khan Mirzaei M, Xue J, Peng X, Ralser A, Mejías-Luque R, Gerhard M and Deng L*

Gut virome profiling identifies an association between temperate phages and colorectal cancer promoted by Helicobacter pylori infection 15(2): 2257291. (IF: 14.4)
2023 Gut Microbes

Ru J, Khan Mirzaei M, Xue J, Peng X and Peng X, and Deng L*

ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis 15(1): p. 2192522. doi: 10.1080/19490976.2023.2192522.
2023 Microbiology Spectrum

Unterer, M., M.K. Mirzaei, and Deng L*

Targeted Single-Phage Isolation Reveals Phage-Dependent Heterogeneous Infection Dynamics 0(0): p. e05149-22.
2022 FEMS Microbiology Reviews

Tiamani K, Luo S, Schulz S, Xue J, Costa R, Khan Mirzaei M & Deng L*

The role of virome in the gastrointestinal tract and beyond doi:10.1093/femsre/fuac027
2021 Trends Microbiol.

Khan Mirzaei M, Deng L*

New technologies for developing phage-based tools to manipulate the human microbiome 18:S0966-842X(21)00118-9. doi: 10.1016/j.tim.2021.04.007.
2021 Signal Transduction and Targeted Therapy

Unterer M, Khan Mirzaei M, Deng L*

Gut Phage Database: phage mining in the cave of wonders 17;6(1):193. doi: 10.1038/s41392-021-00615-2.
2019 Nature Microbiology

Dzunkova M, Low SJ, Daly JN, Deng L, RinkeC, Hugenholtz P

Defining the human gut host-phage network through single-cell viral tagging 4(12):2192-2203. doi: 10.1038/s41564-019-0526-2
2014 Nature

Deng L, Ignacio-Espinoza JS, Gregory A, Poulos PT, Weitz JS, Hugenholtz P, Sullivan MB

Viral tagging reveals discrete populations in Synechococcus viral genome sequence space 513, 242-245. doi: 10.1038/nature13459.

Publications

Microbiome 14:113 (2026)

Wang, X. ; Tian, S. ; Zhang, Y. ; Yang, L. ; Hu, D. ; Wang, Z. ; Yang, X. ; Li, S. ; Wei, J. ; Zhou, W. ; Wang, S. ; Deng, L. ; Li, F. ; Hou, S. ; Li, P. ; Ru, J.

Bacteria and phage consortia modulate cecal SCFA production and host metabolism to enhance feed efficiency in ducks.
Orthopadie, DOI: 10.1007/s00132-025-04690-z (2025)

Rupp, M. ; Ferry, T. ; Khan Mirzaei, M. ; Alt, V. ; Deng, L. ; Walter, N.

Bakteriophagen zur Behandlung muskuloskelettaler Infektionen – Eine Übersicht zu klinischem Einsatz, offenen Fragen und rechtlichem Rahmen.