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Helmholtz Munich I Daniela Barreto

Addressing Bias in Machine Learning for Equitable Healthcare

Featured Publication, Computational Health, Health AI, ICB,

Machine learning is transforming the study of human health, offering deep insights into individual cell behavior. Building on existing knowledge that biases in machine learning can impact fairness and accuracy, a new study, led by Theresa Willem, AI Ethics Consultant at Helmholtz AI, and Prof Fabian Theis, Head of the Computational Health Center at Helmholtz Munich, specifically assesses critical biases in models designed for human single-cell data. Their findings highlight the need for careful evaluation to ensure reliable and equitable outcomes in healthcare and research.

Why Biases in Machine Learning Matter

Large datasets are essential for identifying patterns and making predictions in machine learning. However, distortions caused by limited diversity, technical issues, or other factors can compromise model performance. This may result in healthcare tools that deliver less accurate diagnoses, predictions, or treatments, particularly for underrepresented groups.

The study analyzed biases in machine learning models trained on human single-cell data, tracing their origins and interactions across the development pipeline. This pipeline-informed approach highlights how biases interconnect, potentially amplifying their impacts and complicating mitigation efforts.

“Biases in machine learning are not just a technical issue; they are ethical challenges that directly impact fairness and trust,” says Theresa Willem. “If we don’t address them now, we risk creating healthcare solutions that fail those who need them the most.”

Embedding Ethical Principles from the Start

To ensure fairness and reliability in machine learning tools, the study emphasizes the importance of embedding ethics as a core principle. By integrating ethical considerations into the research and development process - rather than treating them as afterthoughts - this novel approach fosters collaboration between science and the humanities. It ensures that ethical principles are foundational rather than retrofitted.

“Integrating ethics from the start is crucial,” says Prof Alena Buyx, Professor for Ethics in Medicine and Health Technologies and Director of the Institute of History and Ethics in Medicine at TUM. “Ethical reasoning must be embedded within AI and healthcare development to ensure that these systems are both fair and trustworthy.”

This perspective is particularly important considering the far-reaching effects of medical decision-making, regulatory frameworks, and public trust in AI-driven healthcare.

Ensuring Ethical and Fair Machine Learning in Healthcare

The authors stress the urgent need to mitigate biases and ensure machine learning tools are both inclusive and reliable. They advocate for creating more diverse datasets, developing robust methods to detect and correct algorithmic biases, and embedding fairness, transparency, and ethical principles into model design.

“Machine learning holds incredible promise for advancing healthcare, but only if we ensure its tools work equitably for everyone,” says Fabian Theis.

As machine learning continues to play an increasingly central role in research and medicine, the study underscores that addressing bias is not only a technical challenge but an ethical imperative. Ensuring fairness and equity in these systems is crucial to building a healthcare system that serves all populations effectively and justly.

 

Original Publication

Willem et al., 2025: Biases in machine-learning models of human single-cell data. Nature Cell Biology. DOI: 10.1038/s41556-025-01619-8

Fabian Theis

Prof. Dr. Dr. Fabian Theis

Director of Computational Health Center, Director of Institute for Computational Biology