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From Metabolomics to Astrochemistry Tracing the First Building Blocks of Life

What connects Helmholtz Munich with space research? The globally unique analytical methods developed by Prof. Philippe Schmitt-Kopplin not only decipher metabolic processes – such as those involved in environmentally triggered diseases or diabetes – but also unravel the chemical evolution of our solar system. Even NASA relies on his analyses to trace the origins of life.

What connects Helmholtz Munich with space research? The globally unique analytical methods developed by Prof. Philippe Schmitt-Kopplin not only decipher metabolic processes – such as those involved in environmentally triggered diseases or diabetes – but also unravel the chemical evolution of our solar system. Even NASA relies on his analyses to trace the origins of life.

On September 24, 2023, in the desert of Utah, USA: A small space capsule carrying an exceptionally precious cargo safely landed on the dusty ground: freshly returned from space, NASA's OSIRIS-REx probe brought back approximately 120 grams of rock and dust material from the asteroid Bennu. Scientists eagerly awaited these samples, as they originate from a cosmic relic dating back to the early days of our solar system. Through detailed analysis of the material from Bennu, researchers hope to gain insights into its primordial history and, more broadly, to better understand the mysteries surrounding the emergence of life on Earth.​

They anticipate that these samples contain traces of chemical processes that once laid the foundation for life on our planet. Deciphering Bennu's secrets requires more than advanced space travel; it demands sophisticated analytical techniques like those developed and employed by Prof. Philippe Schmitt-Kopplin, director of the independent research group “Analytical Biogeochemistry” at Helmholtz Munich. Using high-resolution mass spectrometry and nuclear magnetic resonance spectroscopy (NMR), his team examines the molecular signature of these samples, opening new perspectives on the origins of organic chemistry in the universe.​

A Window into the Early Solar System

Bennu belongs to a rare class of asteroids considered primitive and carbon-rich. Long before the OSIRIS-REx mission, scientists had found indications through telescopes and spectrometers that Bennu possesses a chemical composition originating from the dawn of the solar system. This assumption was confirmed when the OSIRIS-REx probe reached the asteroid after a two-year journey through space and conducted detailed analyses of its surface: Bennu is rich in carbonaceous compounds and contains minerals indicating past contact with water. This makes it a kind of cosmic time capsule, offering insights into the chemical processes of that era billions of years ago. To conduct more extensive studies on Earth, the probe mapped the asteroid, selected a suitable sampling area, and used a special “Touch-and-Go” technique to collect dust and small rock fragments from Bennu's surface.​

Initial analyses of the samples from the OSIRIS-REx mission have already revealed a surprisingly large variety of organic compounds, including amino acids, DNA building blocks, and water-bearing salts. “These findings suggest that Bennu once contained liquid water on its parent body,” says Schmitt-Kopplin. “Water and heat – such as from hydrothermal activity – are considered crucial prerequisites for the development of complex chemical processes that are also the foundation of life on Earth.”  

Unique Samples and a Significant Challenge

The detailed examination of Bennu's samples presents extraordinary challenges for scientists. Firstly, the material is scarce – after all, the OSIRIS-REx mission brought only about 120 grams of rock and dust back to Earth. Each analysis must therefore be conducted in close coordination within the consortium to avoid unnecessary consumption of the valuable samples. Another challenge is preventing contamination of the asteroid material by Earth's environment. The samples from space must be protected as much as possible from contact with Earth's atmosphere and biosphere to ensure that the organic molecules found genuinely originate from Bennu and were not introduced from the terrestrial environment.​

In this video: Researchers at NASA’s Goddard Space Flight Center received a second sample of asteroid Bennu, totaling five grams of pristine material, on July 19, 2024. Credit: NASA Goddard/OSIRIS-REx

Researchers at NASA’s Goddard Space Flight Center received a second sample of asteroid Bennu, totaling five grams of pristine material, on July 19, 2024. In this reel, the sample is prepared for hot water extract, or “Bennu tea,” at Goddard’s Astrobiology Analytical Laboratory. Credit: NASA Goddard/OSIRIS-REx

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All this requires extreme care and highly precise analytics capable of deciphering the smallest chemical signals without altering the sample itself. Extremely sensitive detection methods are also necessary because the samples contain a highly complex mixture of organic molecules and mineral components that differ significantly in structure from terrestrial material. “Most of these chemical compounds are previously unknown,” describes Schmitt-Kopplin the challenge. “Standard methods of chemistry and geology quickly reach their limits here.”

Exploring the Molecular Signature of the Universe

To fully decode the chemical depth of Bennu's samples, methods far beyond conventional analytics are required. This is precisely where Prof. Philippe Schmitt-Kopplin and his team at Helmholtz Munich come into play. Schmitt-Kopplin's group is a global leader in applying Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FTICR-MS), a technique that allows determining the molecular composition of a sample with unprecedented precision. It is based on the rotation of ionized molecules in a very strong magnetic field and detecting them through their characteristic oscillations frequencies. This enables the detection of even the smallest differences in chemical composition – with an accuracy of up to half the mass of an electron.​

From Asteroids to the Cell Nucleus

The analytical techniques used by Schmitt-Kopplin’s team to examine asteroid samples have their roots in a completely different field of research: metabolomics, the study of metabolic processes in the human body. While the FTICR-MS technology is applied to decode the chemical history of Bennu, it plays an equally vital role in biomedicine. Here too, the goal is to identify complex chemical signatures and processes in the human ecosystem – for example, in our microbiome, the bacterial communities that inhabit our bodies. The microbiome acts as a buffer zone between us and our environment at key interfaces such as the skin, gut, or lungs. It also plays a central role in our immune defense. Schmitt-Kopplin’s team explores the chemistry of microbiomes and can identify molecules that are characteristic of specific bacteria – for instance, in chronic inflammatory bowel disease.

Our microbial populations and their chemical messengers are in dynamic interaction with our bodies. They are directly influenced by environmental factors, diet, and lifestyle. Depending on where we live – in a city or in the countryside – our microbiome consists of different microbial communities. This also changes the associated chemical diversity, which may in turn affect environmentally related diseases such as allergies or asthma.

Understanding how the chemistry of microbiomes adapts to environmental factors or diet – or can even be modulated by specific molecules (e.g., from supplements, spices, or probiotics) – plays a key role in Schmitt-Kopplin’s work. It points toward concepts of personalized medicine. For over two decades, his research group has been developing and using FTICR-MS and NMR spectroscopy in the field of metabolomics to make even minimal differences in chemical composition visible.

“Our research could contribute to the development of individually tailored therapies that specifically influence metabolism and counteract diseases preventively.”

Prof. Philippe Schmitt-Kopplin​

In addition to investigating the microbiome, Schmitt-Kopplin’s team can also detect such changes in cell cultures, breath condensate, urine, or blood samples. The scientists search for molecular markers that can indicate a disease at a very early stage – long before any symptoms appear. The same analytical methods used to reconstruct the chemical evolution of asteroids are employed here to detect early metabolic changes in the human body associated with the onset of disease. The aim is to treat related conditions more precisely, earlier, and in a personalized way with targeted medication.

Molecular Processes in Biomedical Research

Speed, Consistency, Precision

A major advantage of FTICR-MS technology in biomedical research is its exceptional measurement accuracy combined with high speed. Thousands of metabolites can be analyzed in hundreds of samples within a short time – with data quality that remains consistent over years. The use of standardized quality controls makes it possible to link new studies seamlessly with past or future analyses.

Artificial Intelligence Meets Mass Spectrometry

Particularly promising is the integration of artificial intelligence (AI) to efficiently analyze high-dimensional data. This approach is increasingly being adopted in industry and has proven beneficial in Schmitt-Kopplin’s research, especially in genome-wide association studies (GWAS).

Non-Enzymatic Chemistry in the Body

Another focus of the research lies in non-enzymatic chemical reactions, which occur in the body just as they do during baking or roasting, known as Maillard reactions. These processes can cause oxidative damage or produce by-products of glycolysis that are associated with chronic diseases. The precise analysis of these reactions offers new insights into the development of diabetes, neurodegenerative disorders, cardiovascular diseases, and chronic inflammation.

Helmholtz Munich: A Hub of Interdisciplinary Research

“The fact that we were able to develop these ultra-precise analytical methods and combine them with NMR spectroscopy is due in part to the creativity and dedication of every team member,” says Schmitt-Kopplin. “But an equally important factor is the interdisciplinary orientation of Helmholtz Munich. As one of Europe’s leading biomedical research centers, it offers a unique infrastructure to translate basic research findings into practical applications. Our work benefits greatly from this environment, which fosters collaboration among chemists, biologists, medical scientists, and data specialists.”

He especially values the close cooperation with other scientific institutions, including the Technical University of Munich, where he teaches in the field of food chemistry and microbiome research, and the Max Planck Institute for Extraterrestrial Physics, with which Schmitt-Kopplin advances astrochemistry projects as a visiting scientist. These interdisciplinary synergies make it possible to open new areas of research and develop methods that go beyond the boundaries of individual disciplines.

The Future of Molecular Analytics

The research on the Bennu samples has only just begun. In the coming years, scientists will continue to study the unique organic molecules found on the asteroid. The aim is not only to understand the chemical evolution of the solar system but also to explore possible parallels with the origins of life on Earth.

“New analytical techniques with even greater sensitivity and improved detection limits could soon help us decipher molecular structures that have never been documented in any terrestrial database. Especially in medicine, metabolomics, high-resolution mass spectrometry, and NMR spectroscopy are opening up new possibilities.”

Philippe Schmitt-Kopplin

The organic mix found on asteroids and on Earth forms the largest chemical library of novel chemistry we are just beginning to understand. The long-term vision is to further develop molecular analytics so that it not only reconstructs past processes but also predicts and even controlls new chemical reactions. Thus, pioneering research on Bennu is not just a glimpse into our own past and that of the solar system – it is likely to spark new impulses for the future of health sciences.

Original Publications

  • Glavin et al., 2025: Abundant ammonia and nitrogen-rich soluble organic matter in samples from asteroid (101955) Bennu. Nature Astronomy. DOI: 10.1038/s41550-024-02472-9
  • Best et al., 2025: Metabolic modelling reveals the aging-associated decline of host–microbiome metabolic interactions in mice. Nature Microbiology. DOI: 10.1038/s41564-025-01959-z
  • Woodward et al., 2025: Continuum of non-targeted data for long term study of complex samples generated by direct infusion ultra-high resolution mass spectrometry. Talanta. DOI: 10.1016/j.talanta.2024.127514
  • Li et al., 2024: Dearomatization drives complexity generation in freshwater organic matter. Nature. DOI: 10.1038/s41586-024-07210-9
  • Lauretta et al., 2024: Asteroid (101955) Bennu in the laboratory: Properties of the sample collected by OSIRIS-REx. Meteorit Planet Science. DOI: 10.1111/maps.14227
  • Yan et al., 2024: Discovery of Glycation Products: Unraveling the Unknown Glycation Space Using a Mass Spectral Library from In Vitro Model Systems. Analytical Chemistry. DOI: 10.1021/acs.analchem.3c05540
  • Naraoka et al., 2023: Soluble organic molecules in samples of the carbonaceous asteroid (162173) Ryugu. Science. DOI: 10.1126/science.abn9033
  • Schmitt-Kopplin et al., 2023: Soluble organic matter Molecular atlas of Ryugu reveals cold hydrothermalism on C-type asteroid parent body. Nature Communication. DOI: 10.1038/s41467-023-42075-y
  • Zhang et al., 2022: Current and future approaches for in vitro hit discovery in diabetes mellitus. Drug Discovery Today. DOI: 10.1016/j.drudis.2022.07.016
  • Laber et al., 2021: Linking the FTO obesity rs1421085 variant circuitry to cellular, metabolic, and organismal phenotypes in vivo. Science Advances. DOI: 10.1126/sciadv.abg0108
  • Sillner et al. 2021: Longitudinal profiles of dietary and microbial metabolites in formula-and breastfed infants. Frontiers in molecular biosciences. DOI: 10.3389/fmolb.2021.660456
  • Mueller et al., 2020: Advanced identification of global bioactivity hotspots via screening of the metabolic fingerprint of entire ecosystems. Scientific Reports. DOI: 10.1038/s41598-020-57709-0

Latest update: April 2025.