2025 Review in Nature Methods

Hrovatin, K. ; Sikkema, L. ; Shitov, V.A. ; Heimberg, G. ; Shulman, M. ; Oliver, A.J. ; Müller, M. ; Ibarra Del Rio, I.A. ; Wang, H. ; Ramirez Suastegui, C. ; He, P. ; Schaar, A. ; Teichmann, S.A. ; Theis, F.J. ; Luecken, M.

Considerations for building and using integrated single-cell atlases

2024 Scientific Article in BMJ

He, C. ; Breitner-Busch, S. ; Huber, V. ; […]; Schneider, A.E.

Rainfall events and daily mortality across 645 global locations: Two stage time series analysis

2024 Scientific Article in European Heart Journal

He, C. ; Breitner-Busch, S. ; Zhang, S. ; Huber, V. ; Naumann, M. ; Traidl-Hoffmann, C. ; Hammel, G. ; Peters, A. ; Ertl, M. ; Schneider, A.E.

Nocturnal heat exposure and stroke risk

2024 Scientific Article in NEJM Evidence

Wallis, R.S. ; Sabi, I. ; Lalashowi, J. ; Bakuli, A. ; Mapamba, D. ; Olomi, W. ; Siyame, E. ; Ngaraguza, B. ; Chimbe, O. ; Charalambous, S. ; Rachow, A. ; Ivanova, O. ; Zurba, L. ; Myombe, B. ; Kunambi, R. ; Hoelscher, M. ; Ntinginya, N.E. ; Churchyard, G.

Adjunctive N-acetylcysteine and lung function in pulmonary tuberculosis

2024 Scientific Article in Am. J. Respir. Crit. Care Med.

Jakwerth, C.A. ; Weckmann, M. ; Illi, S. ; Charles, H. ; Zissler, U.M. ; Oelsner, M. ; Guerth, F. ; Omony, J. ; Nemani, S.S.P. ; Grychtol, R. ; Dittrich, A.M. ; Skevaki, C. ; Foth, S. ; Weber, S. ; Alejandre Alcazar, M.A. ; van Koningsbruggen-Rietschel, S. ; Brock, R. ; Blau, S. ; Hansen, G. ; Bahmer, T. ; Rabe, K.F. ; Brinkmann, F. ; Kopp, M.V. ; Chaker, A.M. ; Schaub, B. ; Von Mutius, E. ; Schmidt-Weber, C.B.

17q21 variants disturb mucosal host defense in childhood asthma

2023 Scientific Article in Am. J. Respir. Crit. Care Med.

Schwarz, M. ; Schneider, A.E. ; Cyrys, J. ; Bastian, S. ; Breitner-Busch, S. ; Peters, A.

Impact of ambient ultrafine particles on cause-specific mortality in three German cities

2023 Scientific Article in Sci. Transl. Med.

Lang, N.J. ; Schniering, J. ; Porras-Gonzalez, D.L. ; Yang, L. ; De Sadeleer, L.J. ; Jentzsch, R.C. ; Shitov, V.A. ; Zhou, S. ; Ansari, M. ; Agami, A. ; Mayr, C. ; Hooshiar Kashani, B. ; Chen, Y. ; Heumos, L. ; Pestoni, J. ; Molnar, E.S. ; Geeraerts, E. ; Anquetil, V. ; Saniere, L. ; Wögrath, M. ; Gerckens, M. ; Lehmann, M. ; Yildirim, A.Ö. ; Hatz, R.A. ; Kneidinger, N. ; Behr, J. ; Wuyts, W.A. ; Stoleriu, M.-G. ; Luecken, M. ; Theis, F.J. ; Burgstaller, G. ; Schiller, H.

Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multilineage cell circuit dynamics in human lung fibrogenesis

2023 Scientific Article in Environ. Int.

Ni, W. ; Nikolaou, N. ; Ward-Caviness, C. ; Breitner-Busch, S. ; Wolf, K. ; Zhang, S. ; Wilson, R. ; Waldenberger, M. ; Peters, A. ; Schneider, A.E.

Associations between medium- and long-term exposure to air temperature and epigenetic age acceleration

2023 Scientific article in nature medicine

Sikkema, L. ; […] ; Schniering, J. ; […]; Kapellos, T. ; […]; Schiller, H. ; […]; Luecken, M. ; Theis, F.J.

An integrated cell atlas of the lung in health and disease

2022 Scientific article in nature

Kamal, N. ; Tsardakas Renhuldt, N. ; Bentzer, J. ; Gundlach, H. ; Haberer, G. ; Juhász, A. ; Lux, T. ; Bose, U. ; Tye-Din, J.A. ; Lang, D. ; van Gessel, N. ; Reski, R. ; Fu, Y.B. ; Spégel, P. ; Ceplitis, A. ; Himmelbach, A. ; Waters, A.J. ; Bekele, W.A. ; Colgrave, M.L. ; Hansson, M. ; Stein, N. ; Mayer, K.F.X. ; Jellen, E.N. ; Maughan, P.J. ; Tinker, N.A. ; Mascher, M. ; Olsson, O. ; Spannagl, M. ; Sirijovski, N.

The mosaic oat genome gives insights into a uniquely healthy cereal crop

2022 Scientific article in nature methods

Luecken, M. ; Büttner, M. ; Chaichoompu, K. ; Danese, A. ; Interlandi, M. ; Müller, M. ; Strobl, D.C. ; Zappia, L. ; Dugas, M. ; Colomé-Tatché, M. ; Theis, F.J.

Benchmarking atlas-level data integration in single-cell genomics

2021 Scientific article in nature biotechnology

Lotfollahi, M. ; Naghipourfar, M. ; Luecken, M. ; Khajavi, M. ; Büttner, M. ; Wagenstetter, M. ; Avsec, Z. ; Gayoso, A. ; Yosef, N. ; Interlandi, M. ; Rybakov, S. ; Misharin, A.V. ; Theis, F.J.

Mapping single-cell data to reference atlases by transfer learning

2021 Scientific Article in Science Advances

Gerckens, M. ; Schorpp, K.K. ; Pelizza, F. ; Wögrath, M. ; Reichau, K. ; Ma, H. ; Dworsky, A.-M. ; Sengupta, A. ; Stoleriu, M.-G. ; Heinzelmann, K. ; Merl-Pham, J. ; Irmler, M. ; Alsafadi, H.N. ; Trenkenschuh, E. ; Sarnova, L. ; Jirouskova, M. ; Frieß, W. ; Hauck, S.M. ; Beckers, J. ; Kneidinger, N. ; Behr, J. ; Hilgendorff, A. ; Hadian, K. ; Lindner, M. ; Königshoff, M. ; Eickelberg, O. ; Gregor, M. ; Plettenburg, O. ; Yildirim, A.Ö. ; Burgstaller, G.

Phenotypic drug screening in a human fibrosis model identified a novel class of antifibrotic therapeutics

2021 Scientific Article in Lancet Planet Health

Zhang, S. ; Mwiberi, S. ; Pickford, R. ; Breitner-Busch, S. ; Huth, C. ; Koenig, W. ; Rathmann, W. ; Herder, C. ; Roden, M. ; Cyrys, J. ; Peters, A. ; Wolf, K. ; Schneider, A.E.

Longitudinal associations between ambient air pollution and insulin sensitivity: Results from the KORA cohort study

2021 Review in Cell

Peters, A. ; Nawrot, T.S. ; Baccarelli, A.A.

Hallmarks of environmental insults

2021 Scientific article in nature medicine

Muus, C. ; Luecken, M. ; […] ; Conlon, T.M. ; […] ; Ziegler, C.G.K.

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

2020 nature

Conlon, T.M. ; John-Schuster, G. ; Heide, D. ; Pfister, D. ; Lehmann, M. ; Hu, Y. ; Ertüz, Z. ; López, M.A. ; Ansari, M. ; Strunz, M. ; Mayr, C. ; Ciminieri, C. ; Costa, R. ; Kohlhepp, M.S. ; Guillot, A. ; Güneş, G. ; Jeridi, A. ; Funk, M.C. ; Beroshvili, G. ; Prokosch, S. ; Hetzer, J. ; Verleden, S.E. ; Alsafadi, H.N. ; Lindner, M. ; Burgstaller, G. ; Becker, L. ; Irmler, M. ; Dudek, M. ; Janzen, J. ; Goffin, E. ; Gosens, R. ; Knolle, P. ; Pirotte, B. ; Stöger, T. ; Beckers, J. ; Wagner, D.E. ; Singh, I. ; Theis, F.J. ; Hrabě de Angelis, M. ; O’Connor, T. ; Tacke, F. ; Boutros, M. ; Dejardin, E. ; Eickelberg, O. ; Schiller, H. B. ; Königshoff, M. ; Heikenwalder, M. ; Yildirim, A.Ö.

Inhibition of LTβR signalling activates WNT-induced regeneration in lung

2020 Scientific article in nature genetics

Haberer, G. ; Kamal, N. ; Bauer, E. ; Gundlach, H. ; Fischer, I. ; Seidel, M. ; Spannagl, M. ; Marcon, C. ; Ruban, A. ; Urbany, C. ; Nemri, A. ; Hochholdinger, F. ; Ouzunova, M. ; Houben, A. ; Schön, C.C. ; Mayer, K.F.X.

European maize genomes highlight intraspecies variation in repeat and gene content

2020 Scientific article in nature

Jayakodi, M. ; Padmarasu, S. ; Haberer, G. ; Bonthala, V. ; Gundlach, H. ; Monat, C. ; Lux, T. ; Kamal, N. ; Lang, D. ; […]; Mayer, K.F.X. ; Spannagl, M. ; Li, C. ; Mascher, M. ; Stein, N.

The barley pan-genome reveals the hidden legacy of mutation breeding

2016 Scientific Article in N Engl J Med.

Stein, M.M. ; Hrusch, C.L. ; Gozdz, J. ; Igartua, C. ; Pivniouk, V. ; Murray, S.E. ; Ledford, J.G. ; Marques Dos Santos, M. ; Anderson, R.L. ; Metwali, N. ; Neilson, J.W. ; Maier, R.M. ; Gilbert, J.A. ; Holbreich, M. ; Thorne, P.S. ; Martinez, F.D. ; von Mutius, E. ; Vercelli, D. ; Ober, C. ; Sperling, A.I.

Innate Immunity and Asthma Risk in Amish and Hutterite Farm Children